Halobaculum rubrum: K6T25_06955
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Entry
K6T25_06955 CDS
T07963
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
hrm
Halobaculum rubrum
Brite
KEGG Orthology (KO) [BR:
hrm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hrm03016
]
K6T25_06955 (thpR)
Enzymes [BR:
hrm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
K6T25_06955 (thpR)
Transfer RNA biogenesis [BR:
hrm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
K6T25_06955 (thpR)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
QZY00798
LinkDB
All DBs
Position
1316983..1317543
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AA seq
186 aa
AA seq
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MPRLFVSVDLPDRLADAFAAVQEPLRDVESLRFTDPEQAHCTLTFLGDTDEARVGDVAGV
LEAAVADADASAFELEVGGVGVFPSTDYISVIWVGVRDGHGATELTRIAEAVERETVALG
FDEADHEFTPHFTLARMDDARGKGRVLEYLNEDPTVGRFEVDEIRLTESTLTTDGPEYET
RARVPL
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgactgttcgtctcggtcgacctcccggaccggctcgcggacgcgttcgccgcc
gtgcaggagccccttcgcgacgtcgagagcctccggttcaccgaccccgagcaggcgcac
tgcacactgacgttcctcggcgacaccgacgaggcacgcgtcggcgacgtggccggggtg
ctggaggccgctgtcgcggacgccgacgcgagcgccttcgagctcgaagtgggcggcgtg
ggcgtcttcccgtcgaccgactatatcagcgtgatctgggtcggcgtgcgtgacggacac
ggcgccacggagctgacccggatcgccgaggcggtcgagcgcgagacggtcgcgctcggg
ttcgacgaggccgaccacgagttcacgccgcatttcaccctcgcacggatggacgacgcc
cgcgggaaggggcgggtgctggagtatctgaacgaggacccgacggtgggacggttcgag
gtcgacgagatccgcctcacagagtcgacgctgacgaccgacggccccgagtacgagacg
cgggcgcgggtgccgctgtag
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