Helobdella robusta: HELRODRAFT_81226
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Entry
HELRODRAFT_81226 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12878
THO complex subunit 1
Organism
hro
Helobdella robusta
Pathway
hro03013
Nucleocytoplasmic transport
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_81226
09122 Translation
03013 Nucleocytoplasmic transport
HELRODRAFT_81226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_81226
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_81226
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
HELRODRAFT_81226
Spliceosome [BR:
hro03041
]
Complex C
Other components
EJC/TREX
HELRODRAFT_81226
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
HELRODRAFT_81226
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
20215914
NCBI-ProteinID:
XP_009019118
JGI:
Helro1_81226
UniProt:
T1G4B6
LinkDB
All DBs
Position
Unknown
AA seq
541 aa
AA seq
DB search
GLISDVCTASTLFILLSDLFDMITLDQCAQLFKYLDKNVETWKSEMFYNAGKNYLLRMCN
DLLRRLSKSRNTVFCGQIQLFLAHLFPLEEKSGLNLMSNFNMENMISYNKNPDQCEFNKK
KICKYFCVVSIEFVIMVNTFDALIILSDITIDYNLYKKFWTLQEYFKNPTRCYGTGAWKT
FTGCASGVFGCFKSFKLSQVKMPADNQKNQNFKQECCFAKYLTSDKLFNLQLSDSNFRRN
VLVQFLILFQYLTSHVKFKLSGHVLSEDQISWIADATKTVYELLEETPTDGELFAKTVKH
TLDREENWIAWKNDGCASFIKKKNAPTQNIVPPHNSRKRNIGMDLKSNSKVMKLGNPEMT
KLWNLCLDNELACKSQDRNFVADMSVYFSQAMEQLDPSASIEESYKLINNSTFAWKSLRL
LASQSPAFFSQMHANATPIKNIPRYLELMLNKLNKELPVIIEDKKITENNTGSESSSQEN
DDEMMASDEQFQDFVVKIGNNWKALARIVLKDEGVVKEIEEQNLPSDESCFEVIDEWKVT
G
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
ggcttgatttcagatgtatgcacagcgtcaacgttgttcatcctcctctcagaccttttt
gatatgatcacgctggaccagtgtgcccaactcttcaagtacctcgataaaaacgtcgaa
acctggaagagtgagatgttttacaacgcaggaaaaaattatctgctccgtatgtgcaat
gatttgttgagaagactatccaaatcaaggaatacagtattttgtggtcagatccaactt
tttttggctcatctctttcccttggaagaaaaatcaggtttgaatttgatgagtaacttc
aacatggagaacatgatcagttacaacaaaaatccggatcagtgtgaattcaataagaaa
aaaatatgcaagtatttttgcgttgtttcaattgaatttgtcataatggttaacacattt
gatgcattaatcatcctcagtgacatcacaatcgactacaacttgtacaaaaagttctgg
acgctgcaagaatattttaaaaatccaactcgatgttacggcactggggcttggaagact
tttacagggtgtgcaagtggtgtgttcggatgcttcaaaagtttcaaattgagtcaggtg
aagatgcccgcagacaatcaaaaaaatcagaacttcaagcaggagtgttgttttgcaaaa
tatttaaccagtgataaactcttcaacttgcaactcagcgacagcaacttccggcgaaat
gtattggtccaatttctaattctcttccaatacttaacatcacacgtcaagttcaaactt
tcagggcacgtcctcagcgaggatcaaatctcctggatagctgacgccacaaaaacagtt
tacgagctgctcgaggagacaccaactgatggagaactgttcgcaaaaactgtcaaacat
actttggatcgtgaagaaaattggatcgcttggaagaatgatggttgtgcctctttcata
aagaagaaaaacgcaccgacacaaaacatcgtacctccacacaacagtagaaaaagaaat
attggaatggacttgaaatcgaattcaaaagtgatgaagttaggcaatcctgaaatgacc
aagctgtggaacctctgtctggacaacgaactggcctgcaaatcacaggacaggaatttt
gttgctgacatgagtgtgtacttcagccaagccatggagcagctggatccaagtgcctcc
attgaagagagctacaagttgatcaacaattcaacttttgcatggaagtctctaaggctt
ttagcgagtcaaagtcctgcattcttctctcaaatgcacgcaaatgcaactccgattaaa
aatattcctcgctatttagaactgatgttaaacaaactgaacaaagagctacctgtaatc
attgaggataagaagattactgaaaataatactggcagcgaaagcagctctcaagaaaac
gacgatgagatgatggcttctgacgaacaatttcaagattttgtcgtcaaaattggcaac
aactggaaagctctggcgaggattgttctgaaggacgaaggcgtggtcaaagagatagaa
gaacagaatctaccaagcgatgagtcatgtttcgaagtcattgatgaatggaaggtaacg
ggatga
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