KEGG   Halosimplex rubrum: HZS55_18585
Entry
HZS55_18585       CDS       T06687                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hrr  Halosimplex rubrum
Pathway
hrr03030  DNA replication
hrr03410  Base excision repair
hrr03420  Nucleotide excision repair
hrr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hrr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HZS55_18585
   03410 Base excision repair
    HZS55_18585
   03420 Nucleotide excision repair
    HZS55_18585
   03430 Mismatch repair
    HZS55_18585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hrr03032]
    HZS55_18585
   03400 DNA repair and recombination proteins [BR:hrr03400]
    HZS55_18585
Enzymes [BR:hrr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HZS55_18585
    6.5.1.6  DNA ligase (ATP or NAD+)
     HZS55_18585
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HZS55_18585
DNA replication proteins [BR:hrr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HZS55_18585
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HZS55_18585
DNA repair and recombination proteins [BR:hrr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HZS55_18585
   NER (nucleotide excision repair)
    Other NER factors
     HZS55_18585
   MMR (mismatch excision repair)
    Other MMR factors
     HZS55_18585
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: QLH79175
UniProt: A0A7D5T8N0
LinkDB
Position
3726034..3727731
AA seq 565 aa
MELAAFAERARAIEAESADTDIVERVTDLLETAGADLPVVARYVQGRVFPAHDSTKLDIG
PALCYEAIAKAAGRNVTVDDVEERVADVGDVGEVAARYDFGGQQGLAAFGAGAGAGDGDG
NGAGGADDLTVAEVDAQLRDLAATEGSGSRDTKRDILFGLFNRAGDDEARYLARLVLSEM
RIGVGDGAVRDATADAFDVPVGEVERALQVTNDHGEVAVVAREEGLDGLESLGLEVGRPV
GAMLAQAGTVTEALDDWEAAAVEWKFDGARVQVHYDGEETALFSRNMEAVTDPLPEVVEF
VEDALDAPAILDGEVVAVADDGSPLPFQEVLRRFRRKHDVAKAREDVLVEFRAFDCLHAD
GDDLLDRPLVERHNRLEAALGDAGAEALSALTVSDDPDGIADIEAEALEAGHEGIMLKNP
ESAYTPGRRGKQWLKRKPDVETLDLVVTGAEWGEGRRAELLGTFEVSARTDDGFAPLGKV
ATGITDEELEALTELLEPHVLGEDGADVDLDPAVVFEVGYEEIQTSPTYAAGYALRFPRF
LGVRDDIDPADADSLERVERLAERQ
NT seq 1698 nt   +upstreamnt  +downstreamnt
atggagctggccgccttcgccgagcgcgcccgggcgatcgaagccgagagcgccgacacc
gacatcgtcgagcgggtgaccgacctgctggagacggcgggcgcggacctgcccgtcgtc
gcccggtacgtgcaggggcgggtgttccccgctcacgactcgacgaaactcgacatcggc
ccggcgctgtgctacgaggccatcgcgaaggcggccgggcggaacgtcaccgtcgacgac
gtggaggagcgggtcgccgacgtgggcgacgttggcgaggtggcggcgaggtacgacttc
ggcggccagcaggggctggcggcgttcggcgcgggcgccggagcgggagatggagacggg
aacggagcgggcggcgccgacgacctcaccgtcgccgaggtggacgcgcaactgcgcgac
ctcgccgcgaccgaggggtcgggcagccgtgacaccaagcgggacatcctgttcgggctg
ttcaaccgggcgggtgacgacgaggcgcggtatctcgcccggctcgtcctctcggagatg
cgcatcggcgtcggcgacggcgccgtcagggacgcgaccgccgacgccttcgacgtgccg
gtcggcgaggtcgagcgggcgctccaggtcaccaacgaccacggcgaggtggcggtggtc
gcccgcgaggagggactcgacggcctcgaatcgctcgggctggaagtcggccggccggtc
ggcgcgatgctcgcccaggccggcaccgtcaccgaggcgctcgatgactgggaggcggcg
gccgtcgagtggaagttcgacggtgccagggtgcaggtccactacgacggcgaggagacg
gccctcttttcgcggaacatggaagcggtgaccgatccgctcccggaggtcgtcgagttc
gtcgaagacgcgctcgacgcccccgcgatactggacggcgaggtcgtcgccgtggcggac
gacgggtcgccgctcccgtttcaggaggtcctgcgtcggttccgccggaaacacgacgtg
gcgaaggcccgcgaggacgttctcgtcgagttccgggcgttcgactgcctccacgccgac
ggcgacgacctgctcgaccggccgctggtcgagcgccacaaccggctcgaagcggcgctg
ggcgacgcgggcgcagaggcgctctcggccctgaccgtctccgacgaccccgacgggatc
gccgatatcgaggccgaggcgctggaggcgggccacgaggggatcatgctgaaaaacccc
gagtcggcctacaccccgggccggcgcggcaagcagtggctcaagcgcaagcccgatgtg
gagacgctggatctggtcgtcaccggcgccgagtggggcgaagggcggcgggccgaacta
ctgggcaccttcgaagtctcggcccggaccgacgacgggttcgccccgctcggcaaggtc
gcgacgggtatcaccgacgaggaactcgaagcgctgaccgagttgctcgaaccgcacgtc
ctgggcgaggacggcgccgacgtggacctcgaccccgccgtcgtcttcgaggtcggctac
gaggagattcagacctcacccacctacgcggccggctacgcgcttcggttcccgcgattt
ctcggcgtccgcgacgatatcgaccccgccgacgccgactcgctggagcgcgtcgagcga
ctggccgaacggcagtga

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