Hirundo rustica (Barn swallow): 120748530
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Entry
120748530 CDS
T09369
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120748530 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrt03400
]
120748530 (LIG4)
Enzymes [BR:
hrt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120748530 (LIG4)
DNA repair and recombination proteins [BR:
hrt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120748530 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
120748530
NCBI-ProteinID:
XP_039910895
LinkDB
All DBs
Position
2:complement(83378770..83383056)
Genome browser
AA seq
912 aa
AA seq
DB search
MASAPVSQPPPKKTVASHVPFADLCSTLERIQKCKSRPEKSKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDVIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRLHVVHKRSGRTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTGCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLHVDEYDEPHEKKRKTVSKVRKIIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGMGKYSKSELESKIAECGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVAPLK
EVFSRMKDNKPMPLDVIAELEERYWWNSCRLSIFRGSTIYVDCYAVVSEPESKIPGTTLS
IRALELRFYGAKVVSHLEEGVSHVVVGEDHSRVEQMKALRRTFGKKFKIVSELWVTHSVE
EGVAKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgtttcgcagcctcctcctaaaaaaacggtggcctctcacgtgcct
tttgcagatctgtgttctactctggagcgaatacagaagtgcaaatctcgtccagagaaa
agcaagtatttcaaagattttctggattcctggaggaaattccatgatgcgctccatcaa
aaagagaaagatgtcacagattccttttacccagctatgcggcttattctcccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcgaagctctatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacgcct
acaggctcacgtggagatgctggagattttgccatgatcgcttactttgtgctaaaaccc
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacatttagatgtgata
gctaataataatgccgctaagaacaaggggcagttaaagaaaagtcttcttcagttaatt
acacagagcacagcattggaacaaaaatggcttatccgaatgattataaaggatctaaaa
cttggtgttagccaacaaactatattttccatttttcatcctgatgctgctgaattgcac
aatgttaccactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaagcaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcaccccttgaaggctcattaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattctcgatggtgaaatgatggcttac
aatcctgagacacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttggggcatgaagtactaagcaaaagatatgaaatattaagtagtgtatttaccccg
gtaaagggcaggttacatgttgtccataagagaagtggcagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaaggaataatggtgaaagatcccatg
tccacatacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagagtatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcatttcctatgtgctattgcagagacgccccctccaaatgaa
aaaccaaccattttccattctatttgtcgtgttggctctggctatactatgaaggagttg
tatgatctaggcttgaaactggctaaacactggaagccctaccataggaaggaccctcct
ggtaacatcttgtgtggaactgagaaacctgaaatgtacattgaaccttgcaactctgtt
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaaactggctgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgact
tcagacatgttagaagaccttagaagcaaagcacaaggaaagctggcatctaagcacctt
catgtagatgagtatgatgagccacatgagaaaaaaagaaaaactgtttcaaaggtgagg
aagataattggaatagctgagcaattcaaggctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaaa
tctgagctggaaagcaaaatagccgaatgtggtggcagtgtggtacagaacccagggcca
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacattattgcttcc
aacaaatatgatgtggtgagggcagaatggcttcttcagtgttttcaaacaaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgcaccactcaag
gaagtgttctcaagaatgaaagacaataagccaatgcctctggacgtgattgcagagcta
gaagaacgttactggtggaacagttgtcggctcagtatattcagaggaagcactatttat
gtggactgttatgctgttgttagtgagcctgaaagcaaaatccctggaactacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagatcattcacgggtagaacagatgaaagcactcaga
agaacatttgggaaaaaatttaaaattgtttcggagctgtgggtaacacactcagtggag
gaaggagtcgcaaagaatgaaaatcagtacttagtttaa
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