Hirundo rustica (Barn swallow): 120753649
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Entry
120753649 CDS
T09369
Symbol
USP47
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47 isoform X1
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hrt01002
]
120753649 (USP47)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hrt04121
]
120753649 (USP47)
Enzymes [BR:
hrt01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120753649 (USP47)
Peptidases and inhibitors [BR:
hrt01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120753649 (USP47)
Ubiquitin system [BR:
hrt04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120753649 (USP47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
ubiquitin
Sad1_UNC
Motif
Other DBs
NCBI-GeneID:
120753649
NCBI-ProteinID:
XP_039922047
LinkDB
All DBs
Position
6:57347304..57397607
Genome browser
AA seq
1430 aa
AA seq
DB search
MDWRRGGAAALPAGAEEVEEEEEEEEEEEEEEEEEKEEEKKGEDEPRASPRLPLLLTTAF
GSACCGLRAAPPAMVPSEENQLVPKEAECAAEEPRVLCIIQDTTNSKTVNERVTLNLPAS
TPLKRLFEDVAAKVGYVNGSFDLMWGNGDSVTDTTPIDQNSDKTILDAGFEPGKKNFLHL
TDKDGEQPHVMQEESGTAEDSAQERFIGPLPREGSIGCTNDYVSQSYSYSSVLSKSETGY
VGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEEDPERSIPYQLQRLFVLLQTSK
KRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINQLYQGKLKD
YVRCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVEEALHAFIQPEILDGPNQYFCERC
KKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSVFIDVEDEK
SPQTESCTDSGAENEGSCHSDQMSNDFSNDDGVDEGICLESNSAAERISKAGSEKSSLLY
ELFSVMVHSGSAAGGHYYACIKSFSDDQWYSFNDQHVSKITQEDIKKTYGGSSGSRGYYS
SAFASSTNAYMLIYRLKDPTRNAKFLEAHEYPEHIKQLVQKERELEEQEKRQREIERNTC
KIKLFCMHPTKQIMMENKLEVHKDRTLKEAVEIAYKLMDLEEAVPLDCCRLVKYDEFHDY
LERSYEGEEDTPMGLLLGGVKSTYMFDLLLETRRPDQIFQCYKPGEVMVKVHVVDLKTES
VAPPISVRAYLNQTVSEFKQLISKATHLPAETMRVVLERCYNDLRLLNVSSKTLKAEGFF
RSNKVFVESSESLDRHVTYTDSQLWKLLDRHANTIRLYVSLPEQAPGSQLRRALYQKSSG
AAGNLDEPCERVKGPVGNMKSVEAILEESTEKLKSLSLQQQQQQEGDNGDSSKSTEASDF
ENIESPLNEIDSSASAENRELDNQIQISDPENLQSEERSDSDVNNDRSTSSVDSDILSSS
HSSDTLCNVDNAPLPLANGLDSHSITSSRRSKANQGKKETWDTAEEDSGTDSEYDESGKS
RGEAQYMYFKSEPYAAEEGSGEGQKWLMVHVDKRITLSAFKQHLEPFVGVPSSHFKVFRV
YASNQEFESVRLNETLSSFSDDNKITIRLGRALKKGEYRVKVYQLLINEPEPCKFLLDAV
FAKGMTVRQSKEELLPQLREQCGLDLTIDRFRLRKKTWKNPGTVFLDYHIYEEDINISSN
WEVFLEILDGAEKMKSMSQLAVLSRRWRPSEMKLDSFQEVVLESSSVEELKEKLSEISGI
PLENIEFAKGRGTFPCDISILEIHQDLDWNPKVSALNVWPLYICDDGAVIFYRDKTEELM
ELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAPNKDLTQD
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atggattggcggcggggcggagccgcggcgctgcccgcgggagcggaggaggtggaagag
gaggaagaggaagaggaggaagaagaagaagaagaggaggaggagaaggaggaggagaag
aagggggaggatgagccgcgggcgtccccccgcctcccgctgctgctgacgacggcgttc
ggttcagcctgctgcgggctccgcgccgcgccaccggccatggtgcccagcgaggagaac
cagctcgtccccaaagaggcagaatgtgctgcagaggagccccgggttctgtgtataata
caggacaccacgaattccaagacggtgaatgagcgtgtcacgctgaacctgccggcttcc
acccccctcaaacggctctttgaagacgtggctgccaaagtgggctacgtcaatggctct
tttgatttgatgtggggcaatggagacagcgtcactgacacgactccaatagatcagaac
agtgacaaaaccattctcgatgctggttttgagccagggaagaagaactttctgcatttg
acagacaaggatggtgagcagcctcatgtaatgcaggaggagtcaggtacagcagaggac
agtgcgcaagagagatttataggccctcttccaagagaaggctccattggatgtaccaat
gactatgtcagtcaaagctattcctattcttcagtcctgagcaaatcagagacaggttat
gtggggctggtaaatcaagcaatgacttgctacttgaacagccttctgcaaacacttttc
atgactcctgaatttagaaatgcattgtataagtgggaatttgaggagtctgaagaggat
cctgagaggagtatcccctaccagcttcaaagactgtttgttttactgcagaccagcaaa
aaaagggcaattgaaacaacagatgttacacggagttttggatgggacagtagtgaagca
tggcagcagcatgatgtgcaggagctttgtagagtcatgtttgatgctttggagcagaaa
tggaagcaaacggagcaggctgatcttataaatcaactgtaccaaggcaaactgaaggac
tatgtgaggtgcctagagtgtggctatgaaggctggagaatcgacacgtacctggatatc
cctctggtcatccggccctatggctccagccaggcgtttgctagcgtggaagaagcactg
catgctttcattcagcctgagatccttgatggcccaaatcagtacttttgtgagcgatgt
aagaagaaatgcgatgcaaggaagggtctgcggttcttgcactttccatacctgctgaca
ttacagctgaagagatttgactttgattacaccacaatgcacagaattaaactcaatgat
cgcatgacttttccagaggagttggacatgagtgtctttattgatgttgaagatgagaag
tctcctcagactgagagttgcactgatagtggagctgaaaatgaaggcagttgtcacagt
gatcagatgagcaatgatttttcgaatgatgatggagttgatgaaggaatctgccttgaa
agcaatagtgcagcagagaggatctctaaagctggcagtgaaaagagttctttactttat
gagctcttttctgtcatggttcattctggaagtgctgctggtggccattattatgcctgt
ataaaatcttttagtgatgatcagtggtacagctttaatgatcagcatgttagcaagata
actcaggaagatattaagaaaacgtatggaggatcttctggaagcagaggctattattcc
agtgcttttgctagttccacaaatgcttacatgctgatatacagactgaaagatccaaca
agaaatgcaaagtttcttgaagcacatgaatatccagagcacattaaacaattggttcag
aaagagagagaattagaagaacaagaaaagaggcaacgtgaaattgaacgcaacacgtgc
aagattaaattattctgcatgcatcctacaaaacaaataatgatggagaacaaattggaa
gttcataaggacagaacactgaaggaagctgtggaaatagcttacaagcttatggattta
gaagaggctgttcccttggactgctgtcgccttgtcaaatatgatgagttccatgactac
ttggagcgctcgtacgaaggagaggaggatacccccatgggtttgttactcggaggggtc
aagtcaacctacatgtttgacttactgttggaaacaagaaggcctgaccaaattttccaa
tgctataagcctggtgaggtcatggtaaaagttcatgtagttgacctgaagactgaatct
gttgctcctccaataagtgtgagagcttatttgaatcaaacagtttcagagtttaaacag
ctgatttcaaaggccacgcacctgcctgctgaaaccatgcgggtggtgttggagcggtgc
tacaacgacctgcgtctgctgaacgtgtccagcaaaacactgaaagctgaaggctttttt
aggagcaacaaggtgtttgttgaaagctcagagtccttggaccgtcatgtgacctacaca
gactctcagctgtggaagcttctggatcgccacgcaaacaccatcagactgtacgtttca
ttgccagagcaagctcctggatcccagctcagaagggcactttatcagaagtctagtggg
gctgcaggcaacttggatgagccttgtgaaagagtaaaaggacctgtaggtaatatgaaa
tctgtagaggctattttggaagaaagcacggaaaaacttaaaagcttgtccctgcagcaa
cagcagcagcaggagggagataacggagacagcagcaaaagcacagaagccagtgatttt
gaaaacattgagtcacctttaaatgaaatagactcttcagcatcagcagaaaacagagaa
cttgacaaccaaattcagatttctgatccagagaatctgcagtccgaggagcggtcggac
tcggatgtcaataacgacaggagtacgagctcagtggacagcgacatcctcagctccagc
cacagcagtgacactttgtgcaacgtggacaatgcccccctgcccctggctaacggactg
gattcgcacagcatcaccagtagcaggcgatcaaaagccaatcagggcaagaaggagacc
tgggacacggcagaagaggattcaggaacagacagtgaatacgatgaaagtggcaagagc
agaggagaagcacagtatatgtactttaaatcagaaccctacgctgcagaggagggttca
ggagaagggcagaaatggctgatggtgcacgttgataaaagaattacgctgtctgccttc
aagcaacacttggagccttttgttggagttccgtcttctcacttcaaagtctttagagtc
tatgccagcaatcaagagtttgagagtgttcggctgaatgagaccctttcgtcattctct
gatgacaataagataactattagacttggaagagcccttaagaagggtgaatacagagtt
aaagtctatcagctcttgataaatgagcctgagccatgcaagtttcttctagatgcagtt
tttgctaaaggaatgactgtccgacagtccaaagaggagctgcttcctcagcttcgagaa
caatgtggcctagacttgacaattgacaggtttcgcctacgaaagaaaacctggaagaat
ccaggcactgtgtttctggattatcatatctatgaagaagatatcaatatttccagcaac
tgggaggtcttcttagaaatacttgatggagcagaaaagatgaaatccatgtcacagctt
gctgttttatcgagacgatggaggccatcagagatgaaattagattctttccaggaagta
gtactagaaagcagcagtgtcgaagaattaaaagagaagctaagtgaaataagtggaata
cccttagaaaacatcgaatttgcaaagggtagaggaacctttccatgcgacatttccata
ctagagattcatcaagacttggactggaatccaaaagtatctgcattgaatgtctggccc
ctgtacatttgtgatgatggtgcagtaatattttatagggataaaactgaagaattaatg
gaattaacagatgagcaaagaaatgaactgatgaaaaaagaaagcagcagactccagaaa
actggacaccgggtaacctactctccccgcaaagaaaaagcactaaaaatttatctggat
ggagcaccaaataaagatttgactcaagactga
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