Hirundo rustica (Barn swallow): 120761729
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Entry
120761729 CDS
T09369
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03013
Nucleocytoplasmic transport
hrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120761729 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
120761729 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120761729 (THOC1)
03041 Spliceosome [BR:
hrt03041
]
120761729 (THOC1)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120761729 (THOC1)
Spliceosome [BR:
hrt03041
]
Complex C
Other components
EJC/TREX
120761729 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120761729 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
120761729
NCBI-ProteinID:
XP_039939274
LinkDB
All DBs
Position
1:complement(48638885..48657548)
Genome browser
AA seq
664 aa
AA seq
DB search
MSPPLFSLPEARLRFTTSTREALINKSIKPLLNAFNQVPGSENEKKCTLDQAFRVVVEEE
IINKAPCENLLAIISLAINGVTEGICTASTPFVLLGDVLDCLPLDQCDKIFTFVEKNVAT
WKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNTNEHESTLGQKHTEEREEGMDVEEGEMGDDEAPTSCSIPIDYNLYRKFWSLQ
DYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKFL
TSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVYQ
LLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERSHPEFQLGPPDSKPMRPVR
KRPAPEDFLGKGSNKKILMGNEELTRLWNLCPDNMEACKSESREYMPTLEEFFEEAIEQA
DPENMVENKYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELP
PPSEEIKTGEDEDEEDNDALLKENNESPEVQRDKAMTGEQIESVASRLGEQWKALAPFLE
MKESDIRQIELDSEDVKMRAKQLLVAWQDQEGAHATPENLIVALTKAGLGELAESLTNDT
EGSS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgctcttcagcctgcccgaggcgcggctccgcttcacgacatccaccaga
gaggctctgattaacaaaagcatcaagccgttgttgaatgcatttaatcaggttcctgga
agtgaaaatgagaagaagtgtaccttggatcaagcttttagagttgttgtagaagaagaa
ataataaacaaagctccatgtgagaatctcctggcaattatttcccttgctattaatgga
gtcacagaaggtatctgcactgcatcaactccttttgtgcttctgggggatgttctggat
tgcctccctttggatcagtgtgacaaaattttcacttttgtggagaaaaatgttgctacg
tggaaatctaacacattttactctgcagggaaaaattacttgctgcgcatgtgcaatgat
ctcctaagaagattatctaagtcacaaaatacagtcttttgtggaagaattcaactgttc
ttggctcggttatttccactttcagaaaagtcagggcttaacctacagagtcagtttaac
ctggaaaatgtcactgttttcaataccaatgaacatgagagcactctgggacagaagcac
accgaggagagggaggaaggaatggatgtggaagaaggtgaaatgggagatgatgaagca
ccaacaagttgttccattccaatagattataacctgtatagaaaattctggtcgcttcaa
gattattttagaaatcctgtgcagtgctatgagaaggtgtcatggaaaacgtttcttaag
tactcagaagaagttttggctgttttcaaaagttacaaattggacgacactcaggcttcc
aggaaaaagttggaagaactaaaaacaggaggagaacacgtatattttgcgaagttccta
actagtgaaaagctgatggatttacagctgagtgacagcaacttccgtcgtcacattttg
ttgcagtacctgatactatttcagtatctaaagggacaagtcaaatttaaaagttcaaac
tacgttctaacagatgaacagtctctttggattgaagatactacaaaagcagtctaccag
cttctttcagaaaatcctccagatggggaaagattctcaaaaatggtcgagcatatatta
aatactgaagaaaactggaactcatggaaaaatgagggctgcccaagctttgtgaaagaa
agatctcatccagagtttcagcttggacctcctgattctaagcctatgaggcctgtgagg
aagaggccagctccagaggacttcttaggaaagggatcaaacaaaaaaatccttatgggg
aatgaggaactgacccgcctttggaatttatgtcctgataacatggaagcctgtaaatct
gagagtagggaatatatgccaacactggaggaattttttgaggaagctattgaacaagca
gaccctgaaaacatggttgaaaataagtataaggctgtgaacaattctaactatggctgg
agagcactgagacttctggcacgtagaagtccccacttcttccagccaacaaaccaacaa
ttcaagagtttacctgaatatctagaaaacatggtaatcaaattagccaaggagctgcct
cctccttctgaagaaataaaaacaggtgaagatgaagatgaggaagataatgatgcttta
ttaaaggaaaacaatgaaagtccagaggtgcagcgggacaaagccatgacgggcgagcag
atcgagtccgttgccagcaggctgggggagcagtggaaggccttagcccccttcttggag
atgaaggaatctgatatccggcagatcgagctggacagcgaggacgtgaagatgagagcg
aagcagctgctggtggcctggcaggatcaggagggcgctcacgccacccccgagaacctg
atcgtggcgctgaccaaagccgggctcggggagctggccgagagcctcaccaacgacacc
gaaggcagcagctaa
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integrated database retrieval system
