Hirundo rustica (Barn swallow): 120763421
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Entry
120763421 CDS
T09369
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03013
Nucleocytoplasmic transport
hrt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120763421 (UPF1)
03015 mRNA surveillance pathway
120763421 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120763421 (UPF1)
Enzymes [BR:
hrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120763421 (UPF1)
5.6.2.5 RNA 5'-3' helicase
120763421 (UPF1)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120763421 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
120763421 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120763421
NCBI-ProteinID:
XP_039942644
LinkDB
All DBs
Position
26:complement(220160..243662)
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AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgcggacacgcagggctccgagttcgagttcaccgacttcaccctc
cctagccagacccagaccccgcccgggcccggccaggcggggccggcacagggccagggg
ccccccggcgcggggcagggagctccgggcccgctggaagcgcaggtgaacggtcccgat
gggatcctgcagaatggagccgtggatgagaacgtggccaagaccagccagctcctggcc
gagctcaactttgaggaggatgaggaggacacttactacaccaaggatctccctgtgcac
gcctgcagttactgtgggatccacgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacgggcgtgggaacacctctggcagccacatcgtgaatcacctggtg
agagccaagtgcaaagaggtgactctgcacaaggatgggcctctgggagagactgttctg
gaatgctacaactgtggctgcaggaacgttttcctgctgggcttcatcccagccaaggct
gactccgtggtggttctgctgtgcaggcagccgtgtgccagccagagcagcttgaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcctctcctgg
ctggtgaagattccctcggagcaggagcagctccgggcccggcagatcacagcccagcaa
atcaacaagctggaggagctctggaaggaaaatccatctgcaaccctggaggacttggag
aaacctggtgttgatgaggagccccagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagacatgcgcctcatgcaaggggatgag
atctgcctgaggtacaagggagacctggccccgctctggaagggaattgggcacgtgatc
aaagttcctgatagttctacagattatggtgatgagatagccatcgagctgaggagcagc
gtgggagctcctgtggaggtcactcacaacttccaggtggatttcgtgtggaaatcgact
tcctttgacaggatgcagagtgctctgaagacgtttgccgtggacgagacctcagtgtct
gggtacatttaccacaagctgctgggccacgaggtggaagatgtcatcatcaaatgccag
ctgccaaaacgcttcacagcccagggcctccctgatctcaaccactctcaggtttatgct
gtcaagaccgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaa
acagtgacatcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctg
gtgtgtgcccccagcaacatcgcagtggatcagctgacggagaagatccaccagaccggc
ctcaaggtggttcgtctgtgtgccaagagccgcgaggccatcgactcgcccgtgtccttc
ctggccctgcacaaccagatcaggaacatggacagtatgccagagcttcagaagctgcag
cagctcaaggatgagactggagaactttcctctgctgatgagaagcgttaccgggcgctg
aagcgcacggccgagagggagctgctgatgaacgccgacgtgatctgctgcacgtgtgtg
ggagctggcgacccgcgcctggccaagatgcagttccgctccatcctcatcgacgagagc
acgcaggccaccgagcccgagtgcatggtgcccgtggtgctgggggccaagcagctgatc
ctggtgggtgaccactgccagctggggcccgtggtgatgtgcaagaaggcggccaaggcc
gggctgtcgcagtcgctgttcgagcggctggtggtgctgggcatccggcccatccgcctg
caggtgcagtaccgcatgcaccccgccctcagcgccttcccctccaacatcttctacgag
ggctccctgcagaacggcgtcacggcagctgacagggtgaagaaaggctttgatttccag
tggccccagcctgacaaacccatgttcttctacgtgacccagggccaggaggagattgcc
agctcaggcacctcttacctgaacaggaccgaggctgccaacgtggagaagatcaccacc
aagctgctcaaggccggcgccaagcccgaccagatcggcatcatcacgccctacgagggg
cagcgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctac
caggaagtggaaattgcgagcgtggacgccttccagggcagggagaaggatttcatcatc
ctgtcctgcgtgagggccaacgagcaccagggaatcggcttcctcaacgaccccaggagg
ctgaacgtggccctgaccagagccaggtacggggtgatcatcgtgggcaaccccaaagcc
ctgtccaagcagcccctctggaatcacctcctgaactactacaaggagcagaaggtgctg
gtggaggggcccctgaacaacctgcgcgagagcctcatgcagttcagcaaaccccgcaag
ctggtcaacaccatcaaccccggtgcccgtttcatgaccactgccatgtacgatgcacgt
gaggccatcatccccggctccgtctacgaccgcagcagccaaggccgcccatccaacatg
tacttccagacccacgaccagatcgggatgatcagtgctggccccagccacgtcactgcc
atgaacattcccatccccttcaacctggtcatgcccccgatgccgcccccgggctacttc
ggccaggccaacggccccgctgcaggccgtggggctcccaaggggaagacgggccgcggc
gggcggcagaagaatcggtttgggattcctggcacgagccagtccaacctccccaacagc
caggccagccaggacgtggtgtcccagcccttctcccagggccccctgacccagggctac
atctccatgagccagccctcacagatgagccagcctgggctctcccagccggaattatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggac
tcaacttaccagggggaacgagcatatcaacatggtggagtgacgggactgtcacagtat
tag
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integrated database retrieval system
