Hirundo rustica (Barn swallow): 120763950
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Entry
120763950 CDS
T09369
Symbol
TIA1
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120763950 (TIA1)
03041 Spliceosome [BR:
hrt03041
]
120763950 (TIA1)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120763950 (TIA1)
Spliceosome [BR:
hrt03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120763950 (TIA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM
RRM_3
Calcipressin
Nup35_RRM_2
XOO_2897-deam
Motif
Other DBs
NCBI-GeneID:
120763950
NCBI-ProteinID:
XP_039943519
LinkDB
All DBs
Position
28:complement(152020..177262)
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AA seq
369 aa
AA seq
DB search
MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA
AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR
ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS
TYETNTKQLSYDEVVTQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY
SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETPDMVTPVQQGQLSYPPAYGQWGQW
YGGAQLGQYVPNGWQVPTYGVYGQAWNQQGFGQSQSSAPWLGPGYGVPPAQNGAVVPAQP
GFRVGFETP
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgaaatgcccaagaccctgtacgtggggaacctctccagggacgtgaccgag
gctctgatcctccagctgttcagccagatcggaccctgcaagaactgcaagatgatcatg
gatacagctggcaatgatccctactgcttcgtggagttctacgagcaccggcacgcggcc
gcagcgctggctgccatgaacggcaggaagataatgggtaaggaggtcaaggtcaactgg
gccaccacccccagcagccagaagaaagacaccagcaaccatttccacgtctttgttgga
gacctcagccccgagatcacaactgaagacatcaaagccgcctttgctccctttggcaga
atctcggacgcgcgggtggtcaaggacatggccacgggcaagtccaagggctacggcttc
gtctccttcttcaacaaatgggacgccgagaacgccatccagcagatggggggacagtgg
ctcgggggccggcagatccggaccaactgggccaccaggaaaccccctgctcccaagagc
acctatgagacaaacaccaaacagctgtcctacgacgaggtggtcactcagtccagcccc
agcaactgcaccgtgtactgcgggggcgtcacctcgggcctcacagagcagctgatgcgc
cagaccttctcccccttcgggcagatcatggagatccgagtgttcccggataaaggttac
tccttcgtcaggttcaattcccacgagagcgccgcccacgccatcgtctccgtcaacggc
accaccatcgagggccacgtggtgaagtgttactggggcaaggagacgcccgacatggtc
acccccgtgcagcagggccagctgagctacccaccggcctacgggcagtgggggcagtgg
tacggcggtgcccagctgggccagtacgtgcccaacggctggcaggtgcccacctacggc
gtctacggacaggcctggaaccagcagggctttgggcagagccaatcgtcggcgccgtgg
ctgggccccggttacggcgtgccgccggcgcagaacggcgccgtggtgccggcgcagccc
ggcttccgcgtgggcttcgagacgccctga
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