Homo sapiens (human): 80336
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Entry
80336 CDS
T01001
Symbol
PABPC1L, C20orf119, EPAB, PABPC1L1, dJ1069P2.3
Name
(RefSeq) poly(A) binding protein cytoplasmic 1 like
KO
K13126
polyadenylate-binding protein
Organism
hsa
Homo sapiens (human)
Pathway
hsa03015
mRNA surveillance pathway
hsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
80336 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
80336 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsa03019
]
80336 (PABPC1L)
03041 Spliceosome [BR:
hsa03041
]
80336 (PABPC1L)
Messenger RNA biogenesis [BR:
hsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
80336 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
80336 (PABPC1L)
Spliceosome [BR:
hsa03041
]
Complex C
Other components
Complex C specific factors
80336 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
Nup35_RRM
MARF1_RRM1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
80336
NCBI-ProteinID:
NP_001359108
HGNC:
15797
Ensembl:
ENSG00000101104
LinkDB
All DBs
Position
20:44910060..44939316
Genome browser
AA seq
619 aa
AA seq
DB search
MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERE
AELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEK
HEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN
LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY
YGCGPVTPTQPAPRWTSQPPRPSSAYPPGASMVRPPVVPRRPPAHISSVRQASTQVPRTV
PHTQRVANIGTQTTGPSGVGCCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTASM
LAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDE
AVAVLQAHQAMEQPKAYMH
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggttctggctacccgcttgcctcgctttacgtgggcgatctgcacccc
gacgtgaccgaggccatgctctatgagaagttctctcccgccggccccatcctgtccatc
cgcgtgtgccgcgatgtagccacccggcgctcgctgggctacgcctacatcaacttccag
cagcccgcggacgcggagcgggcactggacacaatgaactttgagatgctcaaaggccag
cctattcgcatcatgtggtcccagcgagacccaggacttcgcaagtcaggtgtgggcaac
atcttcatcaagaacctggaggactccattgacaacaaggctttatatgataccttctcc
acctttgggaacatcctctcttgcaaggtggcgtgtgacgagcatggctcccggggtttc
ggctttgtccattttgagacccatgaggccgcacagcaggccatcaacaccatgaatggg
atgctgctgaatgaccgcaaagtctttgtgggtcacttcaagtctcgacgggagcgggag
gcggagctgggggcgcgggccctggagttcaccaacatctacgtgaagaacctcccggtg
gatgtggacgagcaaggcctgcaggacctcttctcccagtttgggaaaatgctgagtgtg
aaggtgatgagggacaacagcggccactcgcggtgctttggctttgtcaactttgagaag
catgaggaagcccagaaggccgtggtccatatgaacgggaaggaggtgagcgggcggctg
ctgtacgcgggccgggcccaaaagcgcgtggagcggcagaatgaactgaagcgcaggttt
gagcagatgaagcaggaccggctgaggcgttaccagggtgtgaacttgtatgtgaagaat
ctggacgactccattgatgacgacaaactgaggaaagagttctctccctatggagtaatt
accagtgcgaaggtgatgacagagggtggccacagcaaggggtttggctttgtgtgtttt
tcctccccagaagaggcgacaaaggccgtgacagagatgaacgggcgcatcgtgggcacc
aagccactctacgtggcactggcccagcgcaaagaggagcggaaggccatcttgaccaac
cagtacatgcagcgcctctccaccatgcggaccctgagcaaccccctcctgggctccttt
cagcagccctccagctacttcctgcctgccatgccccagcctccagcccaggctgcatac
tatggctgtggcccagtgacacccacccagcctgcccccaggtggacatcccagccacct
agaccttcctctgcctaccctccaggtgcctcaatggtccggccaccagttgtgcctcgg
cgccccccggcccacatcagcagtgtcaggcaggcctccacccaggtgccacgcacggtg
cctcatacccagagagtagccaacattggtactcagaccacaggacccagtggggtagga
tgctgtacaccaggccggccgctcctgccgtgcaaatgttcctcagcagcacatagcacc
tatcgggtccaggagccggctgtgcacatcccaggacaggagcccctgaccgcgtccatg
ctggctgcggcgcccctgcatgagcaaaagcagatgattggggagcgtctctaccccctt
atccatgatgtccacacccagctggctggcaagatcacgggcatgctgctggagattgac
aactcagagctgttgctcatgctggagtctccagaatccctccatgccaagatagacgag
gcagtggccgtgctgcaggcacaccaggctatggagcagccgaaggcgtacatgcactga
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