Halobacillus salinarum: MUN89_03825
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Entry
MUN89_03825 CDS
T09487
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hsan
Halobacillus salinarum
Pathway
hsan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hsan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUN89_03825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsan03400
]
MUN89_03825
Enzymes [BR:
hsan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUN89_03825
DNA repair and recombination proteins [BR:
hsan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUN89_03825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UOQ45093
LinkDB
All DBs
Position
complement(709781..711550)
Genome browser
AA seq
589 aa
AA seq
DB search
MIKPMLLTMSDDVPEGKDWLYEIKYDGYRALLFCTESDCRLISRNGKDLSAQFPEIIEAA
ARFNHTHLPLTLDGELVILNNPYQANFARLQQRGRLQNHDKIIAASQSRPATYMAFDFLT
DNDHPYKKRKKQLASFLKSFPSSRIQYVETYDDSEEIHKIASLHLSEGIIAKHKQSRYEP
GHRTKQWIKTKLWKDVSGFLTRFDPQNSYYHMEIWDKGQRVPLGSVKNGIESEQSQTLRT
FFKKHGTQRGKKWELAPSICADVHCLGAENGELREPVFSQFRFDLEPDDCTVEKRDFDLA
VIPEEIGASKLEKELWPRVTKRDYLIYLRHIAPYQLSFLKQKKVTLIRYPDGIGEHSFFQ
KHRPDYAPEFIESWENDGEQFMLCNDLSSLLWMGNHGALEFHIPFQKVSSSYPDEIVFDL
DPPSRSEFSLAVTAAQLIKHLMDQLDMISFVKTSGNKGMQLHIPIEEGALTYEETRGFTE
AIARLLVKEKPDIFTIERLKKNRGNRLYLDYIQHAEGKTIVAPYSARATEKATVAAPLFW
EELTEDLSPESFTILNTIARIRQRGCPFKDYDRVRKQQPVEQIKKWFLS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
ttgattaagccgatgctgttaacgatgtcagatgatgtcccggaaggaaaggactggctt
tatgaaattaaatatgatggataccgcgcccttttattttgcacggaaagtgactgccgg
ttgatcagccggaatggcaaggatttatctgcgcaatttcctgaaattattgaagcagcc
gctcgttttaaccatactcatctgccactaacgctggacggggagctggtcattttgaac
aacccctatcaagcaaactttgcacgactccagcaaagaggacgtttacagaatcatgat
aagattattgctgcgtcacaaagccgccctgctacgtatatggcttttgatttccttacc
gataacgaccatccttacaaaaagagaaaaaagcagctagcctcgtttttgaaatccttc
ccctcttcccgcattcaatatgtagaaacctacgacgattcagaggaaatccacaagatt
gcttccctgcacctgtcggaaggaatcattgctaagcataaacagagccgttatgaacct
ggccatcggacgaaacaatggatcaagacaaagctttggaaagatgtgtctgggttttta
acaagatttgatccccaaaacagctactatcacatggaaatatgggacaaagggcagcgt
gttccgcttggatccgttaaaaacggtatcgaatcagaacagtctcagacgctgcgtaca
ttttttaaaaaacatggaacccaacgagggaaaaagtgggagcttgcaccgagcatttgt
gctgatgttcactgtctgggggctgaaaatggggaactccgcgaaccagtattttcacag
tttcgttttgacctcgaacctgatgactgcactgtcgaaaaaagagactttgatttagct
gtgattcctgaggaaatcggagcttctaaattagaaaaagagctttggccgagggttacg
aaaagagactacttgatctacctaaggcatattgctccttatcagctttcatttctaaag
cagaaaaaagtcacgctgattcgttatcctgacggtattggtgaacattctttttttcaa
aagcatagaccggactatgctcctgagttcattgaatcctgggagaatgatggggaacaa
ttcatgttatgcaacgacctttcctcgttattatggatgggaaatcacggtgctctcgag
tttcatattccttttcaaaaggtttcttcctcctacccagatgaaattgtctttgatcta
gaccctccaagcagaagcgaattcagcctggctgtcaccgctgcacaactgattaaacat
ttgatggatcaacttgacatgataagctttgttaaaacctctggaaataaagggatgcag
ctgcatattcccattgaagaaggggcgcttacctacgaggaaacaaggggttttaccgaa
gctattgcccggctcttagtaaaggaaaagcccgatatatttacgattgagcgtttgaag
aaaaatcggggaaatcggttgtatttggattatattcaacacgcagaaggaaaaacgatt
gtggctccttattcagcacgggccaccgaaaaagccaccgttgcagccccattattttgg
gaggaattaacggaggatttatctcctgaatcatttacgattctaaatacaattgcgcgg
attcgtcagcgtggatgcccttttaaggattatgaccgtgttagaaaacaacagcctgtc
gagcaaataaaaaaatggttcctttcatga
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