Hymenobacter sublimis: MWH26_15875
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Entry
MWH26_15875 CDS
T09379
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hsb
Hymenobacter sublimis
Pathway
hsb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MWH26_15875 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsb03400
]
MWH26_15875 (mfd)
Enzymes [BR:
hsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MWH26_15875 (mfd)
DNA repair and recombination proteins [BR:
hsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MWH26_15875 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UPL48656
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All DBs
Position
3797348..3800890
Genome browser
AA seq
1180 aa
AA seq
DB search
MKVTDFLKLYSLDPTTLTVGARLNPATRNSLKPATDKSETPARLHLKGLIGSQDAVLAAA
LHQEFPDQHHLFILHDRDEAAYFLADLQHLVPEEEPLLFPSSYKRPYSFDETENANVLMR
AEVLNKLNSHRGPKTTAEQDAENAADAAEATEDGTTKPKGKRAKASAKETAGALIVTYPE
ALFEKVINKKSLVANTFLVKVGDKLDVNFISDMLAEYDFERSDFVYEAGQFAVRGGIVDI
FSYANELPYRIELFGDEVETIRTFNPESQLSVEKRQQVSIIPNVQTKLLQETRESFLDFI
PRSTAIWAKDVRQTLDVVEEYFDKAEQGFKELLAASGGTQVVSKPEDLFESGKTFRKLLE
GFPVVEFGKRFHFKAGAEEFSFSAKPQPSFNKDFNRLVKNLHDNQQKGYTNIIAAEQVRQ
ADRLRTIFDELDNNVQFQHLLLGLREGYIDETLKLVVYTDHQLFERFYRAQETRKFSKKK
ALTLKELRTLVPGDYVVHQDYGIARFAGLTQVEINDRVQEAIRLVYRDDDVLTVSIHALH
KIAKYSGAEGNPPTMSKLGSPEWENKKKSVKKKVKDIAAELIRLYAKRKTAPGHAFAMDS
FMQAELESSFIYEDTPDQAKATEDVKRDMEVPHPMDRLVCGDVGFGKTEVAIRAAFKAVA
DGKQVAILVPTTILAMQHYKTFRERLGNLPVTVEYVNRFKSTKQIKETLARVAEGKTDIL
IGTHRLTNKDVKFKDLGLLVIDEEQKFGVKTKDKLKELKVNVDTLTLSATPIPRTLHFSL
MGARDLSVIATPPPNRQPVQTELHVFDETLVRDAIARELKRGGQVFYVHNRIKDIEEQAS
MILRLVPDARVTYVHGQMEGDLLEKRMMKFVDGDFDVLVSTTLIESGLDIANANTIIINR
AHMHGLSDLHQMRGRVGRSNKKAYCYLLTPPVAGLPSDARKRLSTLEEFSDLGAGFNVAM
RDLDIRGAGNLLGGEQSGFINDLGFETYHQILDEAVQELKETEFRDLFLGDPTQRLQEAA
GTSAPKECNIETDLQVLIPDRYVSNVSERLQLYSKLDRAKNPEELRKVLTSMVDRFGPLP
PEVEQLADIVRLRWQACQAGFEKLTLKKNLLKGFIPATNNEPYFQSDTFGNILSYVQTHP
RSASMKERKEQLILSVEEVKSVQAAKRILSELGSEEKVGV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggtcaccgattttctcaagctctactccctggacccgaccacgctgacggtgggg
gcccgcctgaacccggccacgcgcaactcgctgaaaccggcgactgacaagtccgagacg
cccgcgcgcctgcacctgaagggcctgataggaagccaggatgccgtgctggccgccgcc
ctgcaccaggagttcccggatcagcaccacctgttcatcctgcacgaccgggacgaggcc
gcctatttcctggccgacttgcagcacctggtgccggaggaggagcccctgctgtttccg
agttcctacaagcggccctactccttcgacgagacggaaaacgccaacgtgctcatgcgg
gccgaggtgctcaacaagctcaactcccaccgtgggcccaaaaccaccgccgagcaggac
gctgaaaatgccgccgacgcggccgaagctaccgaagatggcaccaccaaacccaagggc
aagcgtgccaaagccagcgccaaagaaaccgccggggccctcatcgttacctaccccgag
gccctgtttgagaaggttatcaacaagaaaagcctggtagcgaataccttcctggtaaaa
gtaggcgacaagctggacgtgaactttatcagcgacatgctggccgagtacgactttgag
cgctcggactttgtgtacgaggccgggcagtttgccgtgcgtggcggcatcgtggacatc
ttttcctacgccaacgagctaccctaccgcattgaactgtttggggacgaggtggaaacc
atccggacgtttaacccggaaagccagctctcggtggagaagcgccagcaggtgagcatt
atcccaaacgtgcaaaccaagctgctccaggaaacgcgggagtcgtttctggactttatt
ccgcgcagcactgccatttgggctaaggacgtgcgccagaccctggacgtggtagaggag
tatttcgacaaggccgagcagggcttcaaggagctactggcggcgtcgggcggcacccag
gtagtcagcaagccggaagatttgtttgagtcgggcaagacgttccgcaagctgctggag
ggctttccggtagtggagttcggcaagcgttttcacttcaaggccggggccgaagagttc
agcttcagcgccaagcctcagcccagcttcaacaaggacttcaaccgcctggtaaaaaac
ctgcacgacaaccagcagaagggctataccaacatcattgccgccgaacaggtgcgccag
gccgaccgcctgcgtaccatcttcgacgagctggacaacaacgtgcagtttcagcacttg
ctgctgggcctgcgcgaaggctacattgacgaaacgttgaaactggtggtgtacactgac
caccaactgtttgagcgcttctaccgggcccaagaaacccgcaagttctccaagaaaaag
gccctgaccctaaaggagctgcgcaccctggtacccggcgactacgtggtgcaccaagac
tacggcattgcccgctttgccggcctgacccaggtagaaatcaacgaccgggtgcaggag
gctatccggctggtgtaccgcgacgacgacgtgctgaccgtcagcattcacgccctacac
aagattgccaagtactcgggggccgagggcaacccgcctaccatgagtaagctgggctcg
ccggagtgggaaaacaaaaagaagtcggtcaagaagaaggtcaaggacattgcggctgag
ctaattcggctgtatgccaagcgcaaaaccgcgcccggccacgccttcgccatggactcc
tttatgcaagccgaactggaatcgagcttcatctacgaggatacccccgaccaagccaag
gctaccgaagacgtgaagcgcgacatggaagtgccccatcccatggaccgcctagtgtgc
ggcgacgtaggcttcggcaagacggaagtagccattcgggccgccttcaaggccgtggcc
gatggcaagcaggtggctattctggtgcccactaccatcctggccatgcagcactacaaa
acgttccgggagcggctgggcaacctgcccgtgacggtggagtacgtgaaccgcttcaag
agcaccaagcaaatcaaggagaccctggcccgggtagcggagggaaaaaccgacattctt
atcggcacgcaccgcctcaccaacaaggacgtgaagttcaaggacctgggcctgctggta
attgacgaggagcagaagttcggggtgaaaaccaaggacaagctcaaggagctgaaggtg
aacgtggacacactgaccctctcggccacgcccattccgcgcaccctgcacttctcgctc
atgggcgcccgcgacctgtcggttattgctacccccccacccaatcggcaacccgtacaa
acggaattgcacgtcttcgacgagacgctggtgcgcgacgccattgcccgcgagctgaag
cggggcgggcaggtgttttatgtgcacaaccgcatcaaggacattgaggagcaagccagc
atgattctgcgcctagtgcccgacgcccgcgtaacctacgtgcacggccagatggagggc
gacctgctggaaaagcgcatgatgaaattcgtggatggcgacttcgacgtgctggtgagt
actaccctcattgagtcgggcctggacattgccaacgccaacaccatcatcatcaaccgc
gcccacatgcacggcctcagtgacctgcaccagatgcggggccgggtgggccgctccaat
aaaaaggcctactgctacctgctcacgcccccggtggcgggcctgccgagcgacgcccgt
aagcgcctgagtaccctggaggaattctccgacctgggggcgggcttcaacgtggctatg
cgcgacctggacattcggggggcgggcaacctgctgggcggcgagcagtcgggctttatc
aacgacctgggctttgaaacctaccaccagattctggacgaggcggtgcaggagctcaag
gaaaccgagttccgcgacctgttcctcggcgacccgacccagcgcctacaagaagcagcc
ggcaccagcgcccccaaggagtgcaacatcgaaacggacctgcaagtcctaattccggac
cgctacgtaagcaacgtgtccgagcgcctgcagctgtacagcaagctggaccgggccaaa
aatcccgaggagttgcgcaaggtgctcaccagcatggtagaccggttcggccccctcccc
cccgaggtagagcagctagccgacattgtgcgcctgcgctggcaggcctgccaggccggc
ttcgagaagctcacgctcaagaagaacctgctcaaaggcttcattccggccaccaacaac
gagccctacttccagagcgacaccttcggcaacatcctcagctacgtgcaaactcacccc
cgctccgcttccatgaaagagcgtaaagagcaactcatcctctccgtagaagaagtgaaa
agcgtgcaagccgccaagcgcattctgagcgagttgggcagtgaggagaaggtaggagta
tag
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