Herbinix luporum: SD1D_1113
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Entry
SD1D_1113 CDS
T04072
Symbol
gcdB
Name
(GenBank) Glutaconyl-CoA decarboxylase subunit beta
KO
K20509
carboxybiotin decarboxylase [EC:
7.2.4.1
]
Organism
hsd
Herbinix luporum
Pathway
hsd00620
Pyruvate metabolism
hsd00650
Butanoate metabolism
hsd01100
Metabolic pathways
hsd01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00620 Pyruvate metabolism
SD1D_1113 (gcdB)
00650 Butanoate metabolism
SD1D_1113 (gcdB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
SD1D_1113 (gcdB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsd02000
]
SD1D_1113 (gcdB)
Enzymes [BR:
hsd01000
]
7. Translocases
7.2 Catalysing the translocation of inorganic cations
7.2.4 Linked to decarboxylation
7.2.4.1 carboxybiotin decarboxylase
SD1D_1113 (gcdB)
Transporters [BR:
hsd02000
]
Other transporters
Primary active transporters [TC:
3
]
SD1D_1113 (gcdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OAD_beta
Motif
Other DBs
NCBI-ProteinID:
CUH92659
UniProt:
A0A0K8J5N2
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Position
I:1203625..1204776
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AA seq
383 aa
AA seq
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MDYLVNTLVNLLEASGFYQITYKNLIMIAVACFLLYLAIKKDYEPLLLIPIAFGMLLVNL
FPGIMAQPSVNANGDVVPGGLLRYFYLGDEYGIWPSLIFLGVGAMTDFGPLIANPSSFLL
GAAAQFGIYAAYFGAVLLGFTDGAAASISIIGGADGPTSIFLATKLAPELLGPIAVAAYS
YMSLVPIIQPPIMRLLTTEKERKIKMEQLRPVSKLEKILFPIVVTIIVVLLLPDTAPLVG
MLMLGNLFRESGVVRQLTDVSSNALMYIVVILLGTSVGATTSAETFLNLSTLKIVALGLV
AFAFGTASGILFGKLMCKLSGGKINPLIGSAGVSAVPMAARVSQKVGAEADPTNFLLMHA
MGPNVAGVIGTAVVAGVFLSVFG
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggactatttagtaaatacattagttaatttattagaagcttccggtttctatcaaatt
acttataaaaatcttataatgattgctgttgcctgttttcttttatacctggcaataaaa
aaagattatgaaccacttttgcttattcctatagcattcggaatgctgctggttaatctt
tttcccggtattatggctcagccttccgttaatgccaacggagatgtggttcccggcgga
ctactgcgttatttctatctaggtgacgagtatggaatttggccatccctaatcttttta
ggtgtaggggccatgaccgattttggtcctttaattgccaacccatctagttttttactt
ggggcagcagcacagtttggaatttatgcagcgtattttggagcagttttacttggattt
actgacggagcagcagcatctatctccataataggcggtgctgacggacctacatcaata
tttctagctacaaaactggcacctgaactattaggaccgattgctgttgcagcctattca
tatatgtctcttgttcctattatacaacctccgattatgaggcttcttactaccgagaaa
gaacgtaagattaagatggagcaattaagaccggtatccaagttagaaaagatactattt
cctatagttgttactatcatagtagtacttttattacctgatacggcacctttagtaggt
atgttaatgcttggtaacttgttccgtgaaagtggtgttgtacgtcaattaacagatgta
tcatccaatgcattaatgtatattgtagtaatactactgggtacctcagtaggtgcaact
accagtgcagaaaccttccttaacttaagtaccttaaaaattgtagcactgggcctggtt
gcctttgcctttggaactgccagcggtattctttttggtaaattaatgtgtaaattaagc
ggaggcaaaatcaatcctttgattggttctgccggcgtatctgcagtacctatggctgct
agggtttcccagaaggtaggagcagaagcagatcctaccaacttcttactgatgcatgcc
atgggccctaatgtggcaggtgttatcggtactgccgtagttgcaggtgtatttctatct
gtttttggttaa
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