Herbinix luporum: SD1D_1230
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Entry
SD1D_1230 CDS
T04072
Name
(GenBank) hypothetical protein
KO
K02004
putative ABC transport system permease protein
Organism
hsd
Herbinix luporum
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsd02000
]
SD1D_1230
Transporters [BR:
hsd02000
]
ABC transporters, prokaryotic type
ABC-2 type and other transporters
Putative ABC transporter
SD1D_1230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FtsX
MacB_PCD
CPP1-like
Motif
Other DBs
NCBI-ProteinID:
CUH92776
UniProt:
A0A0K8J537
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All DBs
Position
I:complement(1326272..1329556)
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AA seq
1094 aa
AA seq
DB search
MVMIKNSAWRKNNIREIKYTLERYLAIVLIIALGVGFFSGLKITQTAMVKTLDSYVLNQQ
MYDYKLISTLGLSNEDVEYFSSQDGITAEGAISMDFIADMGIKNDLVLKAHSITDKINHL
AIKSGRMPKAANECVLDARIFSEDMIGTKIRMASSNEEDIFDAFTYREYMVVGIADSVNY
LNYDRGTTSLSDGSIYGFVYMPIEGFSTDYYTEILVRLDGYYEVYSKEYNDFIAQKEKTL
KEDLEMRGELRHQEIVDEASQKVLEAEKEYKEAYEEYLSKKADSEKELNEAYKKLKEAEE
EIRKQEEKLKEAEDKIAEGEKDYKKSLKEYEKSYRDYETQKTNSLAQLESRQKELDLNRE
TVTKAIEEIEESGIINQHNQLSENILKLEAALLQIEDAESEEYIAISSQLKEAKAGLTDI
EASGVLEKYSELKETLTKLDKGQYELDREKKEANRKFEEAYKQLAAAKESLNKAKVQIEN
NKEEIASGWEAIKEAKAEYEKGLKEYKEGKEEAHKSFAEAKEEFKKVEEEIDKGWKEVED
IPTAKVYMLNRNQNMGYASFENDSAIVDGVAKVLPFFFFLVAALVCLTTMTRMVDEQRTQ
IGTLKALGYSDAAISGKYVAYSGSAAIVGSVLGYFLGTKYFPMAIWKAYGMLYGFSSIEY
VFDLKLALFSLAVALICSAGVTYISCKSELLMMPAQLIRPKAPKAGKRVLLEYIPFIWKR
VGFLHKVSIRNILRYKRRFFMTILGIAGCTSLVVAAMGISNSIRNIVNDQFDTIMKYDYN
ISFTEAFNKEERKNFIEKNSDILSECVFILSDEIEVVDDNKIKKATVVATDDPNITNIIG
LHMDSKTLPYPKDGKATISDRLAEEFKLKPGDTITIKINEVDTTDIEIGSIFENYVGNYL
LMTGQTYKALFNKEVQYKNAYATSNNEDLYKVSASLSKDENVATVSVTDDLRNMVNNMMQ
SLDAIIWLVILCAGALGFVVIYNLNNINITERSREIATIKVIGFYSRETKEYVFRETVIL
TVIGSLLGLGLGKLLHSFIMDQIKVEAISFKEQIFASSYLIALIVTFMITFLVNLILRRK
IERINMTESLKSVE
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atggtaatgataaaaaattcagcttggcgcaagaacaatatacgggaaattaaatataca
cttgaacgctaccttgctattgtgcttattattgccctgggggtaggttttttttccgga
ttaaaaatcacacagacagccatggtaaaaaccttagattcttatgttttaaatcagcaa
atgtatgactataaactgatttctactttaggtttgtctaatgaagatgtggaatacttt
tcctctcaggatggtataaccgctgaaggtgctatttccatggattttattgcagatatg
ggtataaaaaatgaccttgtattaaaggcccactccataactgataaaatcaatcactta
gcaatcaaatccggaagaatgccgaaggcggcaaatgaatgtgtactagatgccagaatt
ttttcggaagatatgattgggacaaagattaggatggcttctagtaatgaagaagatatt
tttgatgcatttacatatagggaatatatggtggttggtatcgcagattccgttaattat
ctaaattacgatagaggaactaccagtctttcagacggttccatatatggctttgtttat
atgcctatagagggattttcaactgattactatacagagattttagtccgtttggatggc
tattatgaagtatatagcaaagaatataatgattttattgcccaaaaagaaaaaacatta
aaggaagacttggaaatgaggggggagcttcgccatcaggaaatagttgatgaagccagc
caaaaagtattagaagcagaaaaagaatataaggaagcctatgaagagtatttgtctaaa
aaagctgacagtgaaaaggaactgaatgaggcttataaaaaactaaaagaagcagaagaa
gaaatcagaaaacaggaagaaaaattaaaagaggccgaagataagattgctgaaggggaa
aaggactataaaaaatcactgaaagaatatgaaaagtcctatagggattatgaaacacaa
aagactaatagcttagcccaattagaaagtcgtcaaaaagaacttgatttaaatcgtgaa
actgtaaccaaggccatagaagagattgaagagagcggtataatcaatcagcataatcag
ctttctgaaaatatccttaagctagaagctgctcttttacaaatagaagatgctgaaagt
gaagaatatatagcaattagcagtcagcttaaagaagcaaaggcagggcttacagatata
gaagccagtggtgttttagaaaaatattcagaacttaaagaaactcttaccaagcttgat
aaagggcaatatgagctagacagggaaaaaaaagaagcaaatagaaaatttgaggaagct
tataagcaacttgcagcagcaaaagaaagtcttaataaggctaaagtccagatagaaaac
aataaagaggaaattgcatctggctgggaagctattaaggaagctaaggcagaatatgaa
aaaggccttaaggaatataaggaaggaaaagaagaggcccataagtcttttgctgaagcc
aaagaggagtttaagaaggtagaagaagaaattgataagggatggaaggaagttgaggat
attcccacagccaaggtttatatgctaaatcgcaatcagaatatgggatatgccagtttt
gaaaatgattcagctatagtagacggggttgcaaaggttcttccctttttcttcttctta
gtggccgccttggtatgtttaactacaatgactcgaatggtggatgagcagcgtactcaa
ataggtaccctaaaggccttaggctacagtgatgctgcaattagtggaaaatacgttgcc
tattcaggcagtgctgccatagtgggctcagttcttggatattttctaggaaccaagtat
tttcctatggcaatatggaaagcctatggtatgttatacggcttttcatccattgagtat
gtatttgatctaaaattggccctcttttccttggcagtagctttgatttgctctgccggt
gtgacctatatttcttgtaaatcagagttacttatgatgcctgcacaacttatcaggcca
aaagctccaaaagccgggaagcgggtacttttagagtatataccatttatatggaaaaga
gtaggtttccttcataaggtttcaatccgtaatatattaagatataagcggcgatttttt
atgacaatcctgggtattgcaggatgtacctcattggtagtggcagcaatgggcatcagt
aactcaatccgtaatattgtaaatgatcaatttgatacaattatgaaatacgattataat
atttcttttaccgaagcatttaataaagaggaaagaaagaattttatagagaaaaattcg
gatatattatcagaatgtgtatttatcttatccgatgagatagaagtggtagatgataat
aaaataaaaaaagcaactgtggtagcaactgatgatccaaatattacaaatataataggt
ttgcatatggatagtaagaccttgccatatccgaaagatggtaaagctactataagcgat
aggttggcagaggaatttaagttaaagccaggggatactattactattaagattaatgaa
gttgatactacagatatagaaataggcagtatctttgaaaattatgtaggtaattactta
ttgatgaccgggcaaacttataaggccttatttaataaagaggtccaatataaaaatgcc
tatgccaccagtaataatgaggatttgtacaaggtatctgcaagcttatcaaaggatgaa
aatgtggctactgtatctgtaactgatgatttaagaaatatggttaataatatgatgcag
agtctagacgccattatatggttggttattctctgtgccggtgccctaggctttgtggta
atctataatctgaataatattaatattactgaacgaagccgtgagattgccacaattaaa
gttatcggcttttactctagagaaacaaaggaatatgtttttagagagacggtcatattg
actgtaatcggctcccttcttggccttggtcttggtaagctgcttcacagctttattatg
gatcaaattaaagttgaagccatatcctttaaggagcagatatttgcttctagctattta
atagcccttatagtaacatttatgataacatttttggttaatttgattttaagaaggaag
atagaaagaataaatatgacggaatctctaaaatcggttgaataa
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