Herbinix luporum: SD1D_1704
Help
Entry
SD1D_1704 CDS
T04072
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hsd
Herbinix luporum
Pathway
hsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD1D_1704 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsd03019
]
SD1D_1704 (rnr)
03016 Transfer RNA biogenesis [BR:
hsd03016
]
SD1D_1704 (rnr)
Enzymes [BR:
hsd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SD1D_1704 (rnr)
Messenger RNA biogenesis [BR:
hsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SD1D_1704 (rnr)
Transfer RNA biogenesis [BR:
hsd03016
]
Prokaryotic type
tRNA degradation factors
SD1D_1704 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
TBPIP
OB_Dis3
RNase_II_C_S1
Peptidase_M18
2-oxoacid_dh
RasGAP_C
Motif
Other DBs
NCBI-ProteinID:
CUH93249
UniProt:
A0A0K8J736
LinkDB
All DBs
Position
I:complement(1819479..1821614)
Genome browser
AA seq
711 aa
AA seq
DB search
MRSNDKIEERKKMLEEFFASEEYKPMRFRDIVSLLQVPKDSKHELKEILDSLISQGVIVL
DDKGRYKIPGDNIKTGIFSATQRGFGFVILEGEAEDIFIPENATKGAVHGDKVRIMLSNE
RTGRRQEGIVLQILERGIKEIVGTFQASKNFGFVIPDNQKFGHDIFIPKEDTKGAVTGHK
VVVSLTSYGDEKRSPEGKVVEIIGHVNDPGVDIMSVIKAYDLPVEFPKDVFRILDYVPDE
VDPKEIGKRRDLRDIQTVTIDGEDAKDLDDAISLTKEGDIYHLGVHIADVTHYVKEGSAL
DKEALKRGTSVYLVDRVIPMLPHKLSNGICSLNPGVDRLALSCFMDIDQNGNVISHEIVE
TVIRSDKRMTYTDVSKIIEDKDEELIKKYQDFVPMFMQMLELSEILKMRRHKRGAINFDF
PESKIIVDYNGKPIEIRAYERNKATKIIEEFMLIANETIAENFFWQELPFLYRTHDKPDD
EKIKALSIFIHNFGYSIKMGNEDIHPKELQKLLNKIEDTPEEALISRLTLRSMKQAKYTV
ANTGHFGLSAKYYCHFTSPIRRYPDLQIHRIIKENINGKLNEDRKNHYEKILFEVADHSS
KTERRAEEAEREVEKMKKVEYMMDHIGETFEGVISGVTSWGIYVELPNTVEGMVRVSEMD
DDYYVYDGERYQMVGEHTKKTYKLGQKVKVRVINADKLIRTIDFELVEVEE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtaatgataagatagaagaaagaaaaaaaatgcttgaagagttttttgcaagc
gaagaatataagcccatgagatttagggatattgtaagtttactgcaggtaccaaaagat
tctaaacatgaattaaaagaaatactagattccttaatatcccaaggggttattgtcctt
gatgataagggaagatataaaattccgggagataatattaaaaccggaatattttccgca
actcaaaggggatttggttttgttatattagaaggtgaagcagaggacatctttatacct
gaaaatgccactaaaggagcggtacacggtgacaaggttagaataatgctaagtaatgaa
cgtaccggcagaaggcaggaaggtatagtattgcagatacttgaaaggggtattaaggaa
attgtaggtacctttcaagccagcaaaaattttggttttgtaattcccgataatcaaaag
tttggacatgatatttttattcccaaggaagatacaaaaggagctgttaccggccataag
gtagtggtatctttaacaagttatggggatgaaaagcgcagtcccgaggggaaagtggtt
gaaatcatcggacatgtcaacgatcccggggttgatataatgtctgtaattaaggcctat
gatttgccggtggagtttcccaaggatgtatttagaatattagattatgtaccggatgag
gtagaccctaaggagataggaaagagaagggatctaagagatattcagaccgttaccata
gacggtgaagatgccaaggaccttgatgatgccatatctttaacaaaagaaggggatata
tatcatctgggggtacacatagcagatgtaacccactatgttaaggaaggctctgccctt
gataaagaggccttaaaaaggggaaccagtgtatatctggtagacagagttatccctatg
ctaccccataagctttccaatggtatctgttctttaaatccgggggtagatagactggct
ttaagctgctttatggatattgatcaaaatggcaatgtaataagccatgaaatagtagag
acagttatccgttcagataagcgtatgacttatacggatgtatctaaaattatagaagat
aaggatgaagagttaattaaaaaatatcaagattttgttcctatgtttatgcagatgctt
gaactgtctgaaatattaaagatgcgcaggcataaaagaggagccataaattttgatttt
cctgaaagtaaaattattgtagattataatggaaagcctattgagataagggcctatgaa
agaaataaagctactaagattattgaggagtttatgcttattgccaatgaaactatagct
gaaaacttcttctggcaagaactgccatttttgtatcgtacccatgataagccagatgat
gaaaaaattaaggcactttccatttttattcataactttggctatagtatcaagatggga
aatgaagatatacatcctaaggaacttcaaaaactccttaataagatagaagatactccg
gaagaagctttaatcagccgtcttaccttgcggtctatgaaacaggcaaaatacacagtg
gcaaatacaggacattttggcctgtcagccaaatattactgccattttacttcacctatc
cgtaggtatccggaccttcagatacatcggattattaaggaaaatataaatggaaaactg
aatgaagataggaaaaatcattatgaaaaaatactatttgaagtagctgatcattccagt
aagacagaacgtagggctgaagaagccgagcgggaagtagaaaagatgaaaaaggtagaa
tatatgatggatcatataggggaaacctttgaaggagttatctcaggggttacaagttgg
ggcatctatgtggaacttcccaacaccgtagaaggaatggttagagtaagcgaaatggat
gatgattactatgtatatgacggggagcggtatcagatggtaggtgaacatactaaaaag
acatataaattgggacaaaaagttaaggttcgggttattaatgccgataagctaatccgg
acaattgattttgaattagtggaggttgaagaataa
DBGET
integrated database retrieval system