Herbaspirillum seropedicae SmR1: Hsero_2271
Help
Entry
Hsero_2271 CDS
T01268
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Hsero_2271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_2271
Enzymes [BR:
hse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Hsero_2271
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Hsero_2271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADJ63770
UniProt:
D8IUA8
LinkDB
All DBs
Position
2563648..2566218
Genome browser
AA seq
856 aa
AA seq
DB search
MSTGKLDRYRAKRDFTITPEPSGHASRSRAGAQSQSLQFFIQRHHARRLHYDFRLELDGV
LKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGD
ARAGLAKGHLSFELEGEKLHGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITEL
RPESVKDLGDQAPLAKARASAKAAPDSTGPMPAQMQAQLATLVDRAPAGEQWLCELKFDG
YRGLCRIDHGQAAIYTREGLDWSHRWPILVQALARLPVDEAWIDGEVVALDAQGQISFEA
LQNLARGDRQQADGIRLALYAFDLLYLNGHDLRDIPLRQRKALLRELIPGSDPEGLLLYS
EHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYTEPAG
QRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPTGQQR
RGVHWLRPALVAEVRFAQWTSAGILRHGSFVALREDKDPHQIRREGPQPLAEAKADAKAP
AAAPARSRGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPELRQ
RPLSLVRCPDGHAGKRFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVATVQMG
VLELHAWGATGAALNHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLKTSGG
KGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLRNAPG
ATTVVAYSVRARDGAPVSVPITWEELEQGKGIKADHFRVSTMPARIRSLEQHDPWAHFGQ
APQRLTKAMLAAFDSV
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccggcaagctcgaccgctaccgcgccaagcgcgatttcaccatcacgcccgaa
ccctccggtcatgccagccggagccgggcaggggcgcagtcgcagagcctgcaattcttc
atccagcgccaccatgcgcgccggctgcattatgactttcggctcgagctcgacggtgtg
ctcaagagctgggccgttcccaagggccccagcctggacccacacgacaagcgactggcc
gtgcgggtcgaggaccatcccttcgactacggcagcttcgagggcgacatccccgcgcac
cagtatggcgccggccatgtggtcttgtgggatcgcggtcagtggcgaccgcacggcgat
gcgcgcgccgggctggcaaaaggtcatctgagctttgagctggagggcgaaaaactgcac
ggccgctgggcactggtgcgcatgggcaagcccgccgccgacggcaaggaaaactggctg
ctgatcaaggacgacgacgccgctgcggccagcggcgagcaagcggccatcaccgaactg
cgccccgagagcgtcaaggatctgggcgaccaggcgccgctcgccaaggccagagcaagc
gccaaagccgcgccggacagcaccggtccaatgcccgcgcagatgcaggcgcaactggcc
actctggtcgatcgcgctcccgcaggcgagcaatggctgtgcgagctgaagttcgatggg
tatcgcggcctgtgccgcatcgatcacggccaagccgccatctacacccgggaaggcctg
gactggagccatcgctggcccatcctggtgcaggcgctggcgcgcttgccggtcgatgaa
gcctggatcgatggcgaggtcgtggcgctggacgcgcaaggacagatcagcttcgaagcc
ttgcagaacctggcgcgcggggatcgccagcaggccgatggcatccgcctggcgctgtat
gccttcgatctgctgtacctgaacggccacgacctgcgcgacattcccctgcgtcagcgc
aaggcgttgctgcgtgaactgatccccggttcggacccagagggactgctgctctacagc
gaacacatcgagggccatgccgccgaagtgttccgccacgcctgccagcatggcatggaa
gggatcgtgctcaagcgcgccgatgccccgtacacagggcggcgcgaccgctactggctc
aagctcaagtgcgagcatcggcaagagttcgtcatcgccggctataccgaacccgccggc
caacgcagcggctttggggccatcctggtgggagtctacgatgagcacgagcagttgcgc
tacgccgggcgggtgggcaccggtttcgatgacaagctgctggagacgctgctcaagcag
ttcggcccgctggagcaggaccagccagcctttgccaatccacctaccggccagcagcgg
cgcggggtccattggctcaggccggcgctggtggccgaggtgcgctttgcccaatggacc
agcgccggcatcctgcgccatggcagcttcgtggccctgcgcgaagacaaggacccgcac
cagatccgacgcgaaggcccgcagcccctcgccgaggcaaaggccgatgccaaggcgccg
gccgctgcgcccgcgcgcagccgtggcaaggccagcgatctctctgcacccgtcaccgtg
gccggggtgaagctgacccatcccggcaagatcctctttcccgataccgggctgaccaag
ctggaactggcgcgctattaccagagcgtggcgccgtggatattgcccgaactcaggcaa
cgaccgctgtcgctggtgcgttgcccggacggacatgctggcaagcgcttcttccagaag
cacaccgggcaaggcatgcccgaggccatcgacaccatcgaggtgccggaaggcgagggc
catgcccagtacatgatggtcaacgatgtggccggcctggtcgccaccgtgcagatgggc
gtgctggagctgcatgcctggggcgcgaccggcgctgccctgaatcaccccgaccgcgtg
gtgttcgacctcgatcctgctgacgacgtaccctgggccacggtggtggagggcgcccag
ctggtgcgggggctgttgaaagagatcggactggactgtttcctcaagacctcgggtggc
aagggtctgcatgtgatggtgccgatccggccggaacacgactgggccgtggtcaaggat
tgggcgcaccggttcgccgcgcacctggcgcggcacctgccggaccgtttcatcgccaag
atgagcaaggccgctcgtaacggcaagatctttatcgactatctgcgcaatgcgcccggc
gcgaccacggtggtggcctattcggtgcgcgcccgcgatggtgcgccggtgtcggtgcca
atcacctgggaagagctggaacagggcaagggcatcaaggccgatcatttccgggtgtcc
accatgccggcgcgcatccgcagcctggagcagcacgatccttgggcccacttcgggcag
gctccgcagcgcctcaccaaggccatgctggcggcctttgacagcgtctga
DBGET
integrated database retrieval system
