Herbaspirillum seropedicae SmR1: Hsero_3681
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Entry
Hsero_3681 CDS
T01268
Symbol
dnaX
Name
(GenBank) DNA polymerase III (subunits tau and gamma) protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03030
DNA replication
hse03430
Mismatch repair
hse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hsero_3681 (dnaX)
03430 Mismatch repair
Hsero_3681 (dnaX)
03440 Homologous recombination
Hsero_3681 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hse03032
]
Hsero_3681 (dnaX)
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_3681 (dnaX)
Enzymes [BR:
hse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Hsero_3681 (dnaX)
DNA replication proteins [BR:
hse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Hsero_3681 (dnaX)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Hsero_3681 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
AAA
DNA_pol3_tau_5
RuvB_N
AAA_22
AAA_16
AAA_14
AAA_18
AAA_30
PIF1
AAA_2
Glyco_tranf_2_5
nSTAND3
DUF3646
TsaE
AAA_19
Herpes_Helicase
AAA_24
T2SSE
AAA_assoc_2
Rad17
AAA_28
Motif
Other DBs
NCBI-ProteinID:
ADJ65159
UniProt:
D8IR33
LinkDB
All DBs
Position
complement(4214043..4216181)
Genome browser
AA seq
712 aa
AA seq
DB search
MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK
SLNCVGPDGAGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP
SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKFILATTDPQKIPVTVLSRCLQFNL
KQMPPGHIIGHLDNILNQEGIEFDAPALRLLAQGASGSMRDALSLTDQAIAYAAGKVTLE
AVQGMLGALDQSYLIRILDALAVQDGAALLGVADDMATRSLSYNAALQDLGTLLHQIALA
QAVPAALADDLPNREDILRLSGQFSPEHVQLFYQIAVHGRNELGLAPDEYAGFSMTLLRM
LAFRPVSASATAPIPAASSAPAAAGGRPTAPRQAAPLMAPQVAVTSAPVSRTQAATAPAP
AAPAAAVPAASAPAAAPSAPVQAAAPAAPTSAREAALMALRGGKGGKAPARPAAPAAATP
APAPAAAPAPSAPPAPAARAERAAASMPPDMPEPPPFDAIAAMGRRDRCQPHPCHRPSRW
PRSLKKKTEPRTHVAHTHRTRARSARPPHPAQQQETARIAAELGWDGHWPTLAASLASLR
GVAHQMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVEKLTAALSERFGKEIRVETE
IGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFGASIVPGSIQPR
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtcctatcaagttcttgcccgtaaatatcgtccccgcagcttcgacaccctggtaggc
caggagcacgtcgtgcgcgcgctgacgcacgcgctggaacagcagcggctgcaccacgcc
tatctcttcaccggtacccgcggcgtgggcaagaccacgctctcgcgcatcctggccaag
tcgctcaactgcgtcggtcccgatggcgcgggcggcatcactgccgccccctgtggcgtg
tgcgaagcctgtgtggccatcgacgccgggcgtttcgtcgattacatcgagatggacgcg
gcctccaaccgcggcgtggacgagatggcgcaactgctggagcaggccatctatgcgccc
tccaacgcccgcttcaaggtctacatgatcgacgaagtgcacatgctcaccaaccacgcc
ttcaacgccatgctgaagacgctggaagagccgcccgagcacatcaagttcatcctggcc
acgaccgacccgcaaaagattcccgtgacggtgctctcgcgctgcctgcagttcaatctg
aagcagatgccgcccggccacatcatcggccatctcgacaacatcctgaaccaggaaggc
atcgagttcgatgcgccggccctgcgcctgttggcgcagggcgcttccggttccatgcgc
gatgcgctctcgctgaccgaccaggccatcgcctatgccgccggcaaggtcacgctggaa
gccgtgcagggcatgctgggcgcgctcgaccagtcctacctgatccgcatcctcgatgcg
ctggcggtgcaggatggcgcagccctcctgggcgtggccgacgacatggccacccgcagc
ctgtcctataacgccgccctgcaagacctgggcacgctgctgcaccagatcgccctggcc
caggccgtgccggccgcgctggccgacgacctgcccaatcgcgaagatatcctgcgcctg
tccggccagttcagcccggaacatgtgcaactgttctaccagatcgccgtgcatggccgc
aacgagctgggcctggccccggatgaatacgccggtttcagcatgacgctgttgcgcatg
ctggccttccgtccggtcagcgccagcgccactgcgcccataccggccgcctcgtctgca
ccggctgccgcaggtggccgaccgaccgcaccgcgtcaggccgcgccgctgatggccccg
caagtggccgtgaccagcgccccggtcagccgtacccaagccgccaccgcgccagcgccg
gccgctcctgcggctgcggtccctgccgcatccgctcccgctgccgccccgtcggcgccc
gtccaggcagccgcgccggccgcacccacttctgcccgtgaagccgccctgatggccttg
cgtggcggcaaggggggcaaggcccccgcgcggccagcggctcccgcagccgccacgccc
gcgcctgcaccggctgcagccccggccccgtccgcaccgcctgcacccgccgccagggcc
gaacgcgccgctgcgtcgatgccgccggacatgcccgagccgccgcctttcgatgcgatt
gccgccatgggaagaagagacaggtgccagcctcatccatgccaccgcccatcccgatgg
ccgaggtcgctgaaaaaaaaaactgagccacgcacgcacgtagcgcacacccaccgcacc
cgcgcacgcagcgcccggccgccacaccccgcgcagcagcaggaaaccgcccgcatcgcc
gccgaactgggctgggacggccactggccgaccctggccgccagcctcgcctccctgcgc
ggcgtggcgcaccagatggctttccagagtgaactggtgcgctgcgagccgctcaatggc
ggcaacgtctgcttccacctgcgcatcccgctggaaaccctgcgctcttccggcagtgtc
gaaaagctgacggcagccttgagtgaacgcttcggcaaggaaatccgcgtcgagaccgag
atcggcgccgtcgccgacaccgccaatgcggtcgccgaggccgagcgcgcagaacgccag
cgccaggccgagcacaagatgaagaacgatcctttcgtggtgaccatgatgcgcgaattc
ggcgcttccatcgtgccaggatcgatccagccccgttga
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