Herbaspirillum seropedicae SmR1: Hsero_3988
Help
Entry
Hsero_3988 CDS
T01268
Symbol
pcaB
Name
(GenBank) 3-carboxy-cis,cis-muconate cycloisomerase protein
KO
K01857
3-carboxy-cis,cis-muconate cycloisomerase [EC:
5.5.1.2
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00362
Benzoate degradation
hse01100
Metabolic pathways
hse01120
Microbial metabolism in diverse environments
hse01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
Hsero_3988 (pcaB)
Enzymes [BR:
hse01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.2 3-carboxy-cis,cis-muconate cycloisomerase
Hsero_3988 (pcaB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lyase_1
ADSL_C
Motif
Other DBs
NCBI-ProteinID:
ADJ65459
UniProt:
D8ISP3
LinkDB
All DBs
Position
4573466..4574833
Genome browser
AA seq
455 aa
AA seq
DB search
MSVSIFDSFLTTSEMIAVFDDQAVVQAMLRFEQVLAEAQAAEGVIPDAAARAIASVCRAP
LYDIPALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTRE
ALRLVEGELEQLSRRLLDLAQSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQL
QALAERALQLQLGGAVGTLTVLGEKGPAVAARMAAALELKTPEAAWHTQRDQWIRLGAEM
AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAAARAPQ
QAAALLAAMSQQHERGLGNWQAELAEWPALFLGVHGALRALNDAFAGLVIDAPRMLRNID
ALQGLVFAESASIALAGVIGRPRAHSLLEQLTRKAVADGAQLVDVLVDAVQADAQLRKEI
DLPMLRGLFDPVQATRPARRIAEGQLEHLRTLLAQ
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtttcgatcttcgacagcttcctcaccacttccgagatgatcgcggtgttcgac
gaccaggccgtggtgcaagccatgctgcgcttcgagcaagtgctggccgaggcccaggcc
gccgaaggcgtcatccccgacgctgccgcccgcgccattgccagcgtctgccgcgccccg
ctctatgacatcccggccctgatcgtcgccggccgccgcgccggcgccctggccatccca
ctggtcaaggaattgcagcgcaccgtcgccctctacagcgaagaagctgccacccacgtc
cactggggcagcaccagccaggacgtgctcgatacggccatggtgctggtcacacgagaa
gcgctgcgcctggtggagggcgaactggagcagctctcgcgccgcctgctggacctggcg
caatcgcatctcgacacaccggtgctggcgcgcaccctgatgcaaccggcgcaggtcacc
agcctgggcttgaagttctgcaactgggccgcgccgctgctgcgctcgcgggcgcaattg
caggcgctggccgaacgcgccctgcagctgcaactgggcggcgcagtcggcacgctgacg
gtactgggcgagaaaggcccggcagtggcggcccgcatggccgccgcgctggaactgaag
acccccgaggcggcctggcatacccagcgcgaccaatggatccgcctgggcgccgagatg
gccgtgctggccggcagcctgggcaagatcgccaccgacctgtcgttgatggcgcaagga
gaaatcgccgaactggccgaaccctccggcaatggccgtggcggttcctcggccatgccg
cacaagcgcaatccggtgtcttccatgatcgcgctggccgccgctgcacgcgctccgcaa
caggcagccgccctgctggctgcgatgtcgcagcagcacgaacgcggcctgggcaactgg
caggccgaactggccgaatggccggcgctgttcctgggcgtgcatggcgcgctgcgggcg
ctcaacgatgcctttgccgggctggtgatcgacgcaccgcgcatgttgcgcaacatcgat
gccctgcagggcctggtctttgccgagtccgcttccatcgccctggccggcgtgatcggc
cgtccgcgtgcgcacagcctgctggaacaattgacacgcaaggccgtggccgatggcgcg
caactggtcgatgtactggtcgatgccgtgcaggccgatgcgcaactgcgcaaggagatc
gacctgcccatgttgcgcggcctgttcgatccggtgcaggccacccgccccgcccgccgc
atcgccgaagggcagcttgagcatttgcgcacactgctggcgcagtga
DBGET
integrated database retrieval system
