Hippoglossus stenolepis (Pacific halibut): 118100178
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Entry
118100178 CDS
T08308
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118100178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118100178
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118100178
Spliceosome [BR:
hsp03041
]
Complex C
Other components
Step II factors
118100178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
Flavi_DEAD
AAA_16
PhoH
TsaE
ABC_tran
Sigma54_activ_2
RSRP
Motif
Other DBs
NCBI-GeneID:
118100178
NCBI-ProteinID:
XP_035000868
LinkDB
All DBs
Position
21:17690100..17700565
Genome browser
AA seq
1276 aa
AA seq
DB search
MDAAKGRCGTELQPLYVGHLRYQTNQTNQTLDARRIQHVCRRLAALNDKQAAWRMADGSV
DELSQLEYLSLVSKVCTELDNHLGISDKDLAEFVISLAEKEPSFDGFKAILLQNGAEFMD
SLIGNLLRLIQTMRPPTKAPASKVSEASVKPNTEKDRLKELFPALCRANDPGPKKIGDED
DVKVAADAMKELEMFMPSVSGEDSKSSKSRSEKSRRHSRSRSRDRDRDRHRDRDRDRDRD
RDRDRDRKRRHRSRSSSRSRSQSRDHDRHRERDRDRDQGKRKDKSTRWTERSPSPKKDQD
SDRWKDKHVDRPPPEEPSVGDIYNGKITSIMQFGCFVQLEGLRKRWEGLVHISELRREGR
VANVADVVSKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGSDEISMR
NPDRPVNVNLGHVPELEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDDETG
ILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAK
ERRELKQAAREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFG
GNKASYGKKTALSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAE
AGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDG
MLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVK
FSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTGQE
EIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAET
SLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKTYRLYT
ERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTL
GALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDK
QALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLG
IMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNR
QPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLYNR
YEEPNAWRISRAFRRR
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagcaaagggccggtgtggaaccgaactgcagcctctgtatgtggggcacctg
cgctaccagaccaaccagaccaaccagaccttggacgctcgccgcatccaacatgtctgt
cgtcgtttagccgcgctgaacgataaacaagccgcgtggaggatggcggacggatccgtg
gacgagctctcgcagctcgagtatttgtctctggtgtccaaagtgtgcacggagctcgac
aaccatcttggaatcagcgacaaagacttagctgaatttgtcatcagcctcgcggagaaa
gagccgagtttcgatggattcaaagctattctgctccaaaacggagccgagttcatggat
tctctcatcggcaacttgctcaggctcattcagacaatgcgacctccgaccaaggcgccg
gctagtaaagtctctgaggcgtcggtcaagccaaatacagaaaaggatcgactgaaggag
ttgtttcctgcactttgtcgagcgaacgatccggggccgaagaagattggagatgaagat
gatgtgaaagtggcagctgatgccatgaaagagctggagatgtttatgcccagtgtcagc
ggggaagactcaaaaagcagcaagagccggtccgagaagagcagacgccacagccggagt
cgcagcagagacagagaccgagaccgacacagagatagggacagagaccgagatcgggat
agagacagagacagagacaggaagagaagacatcgttctcgatcaagttccaggtccagg
tctcagtccagagatcacgatcgtcacagagagagagacagggatagagatcaaggtaaa
agaaaagacaaatccacccgctggactgagcgttcaccgagtcccaagaaagaccaagac
tctgatcgctggaaagacaagcacgtggaccgccctccacctgaagagccttcagtcggg
gacatttacaacggcaaaatcaccagcatcatgcagtttggatgctttgttcagctcgag
ggtttaaggaaacgatgggagggattggtccacatctcagagctgcgtcgagagggacgt
gtggccaacgtggctgatgtcgtcagcaaaggccaacgagttaaaatcaaggtgctctcg
ttcactggctccaagaccagcctcagtatgaaggatgtggatcaggagacaggagaagac
ctgaaccccaacaggagaaggaacgtgggaccagacggaagtgacgagatctccatgagg
aacccagaccggccggtcaacgtgaacttgggccacgttcctgaactggagcaggacgac
accctggagcgcaagaggctcactaaaatctctgacccagagaagtgggaaatcaaacag
atgatcgctgccaatgtgctgtccaaagaagagttccctgattttgacgacgagacaggg
atccttcctaaagttgatgatgaagaggacgaagacttggaaattgagctggttgaagaa
gaacctccattcctgaggggacacaccaaacaaagcatggacatgagcccagtcaagatc
gtcaagaatccagatggctctctgtcccaggccgccatgatgcagagcgctctggctaag
gaaagacgagagctgaagcaggctgcgcgtgaggcagagatggactccatccccatgggg
ctgaataaacactgggtggacccactgccagacgtcgacggcaggcagattgcagccaac
atgagaggcatcggcatgatgcccaacgacatcccagagtggaagaaacacgcctttggg
ggcaacaaggcctcttatggaaagaagaccgcactctccatcctggagcagagggaaagt
ctgcccatctacaagctgaaggagcagctcattcaggctgttcatgacaaccagatcctg
attgtgatcggagagacgggatccggtaagaccacacagatcacccagtacctggcagag
gccggttacaccacccgcgggaagattggctgcacgcagccccgtcgtgtggccgccatg
tcggtggcaaagagagtctcagaggaatatggttgttgtcttggacaagaggtgggttac
accatccggtttgaggactgcaccagtcctgagacggtgatcaagtacatgacggacggt
atgctgttgagagagtgtttgatcgactccgaactggggcagtacgccattatcatgttg
gatgaagctcacgagaggacgatccacactgatgttctcttcggcctcctgaagaagact
gtacagaaacgcaccgacatgaagctgatcgttacgtcagctactctggacgctgtgaag
ttctctcagtatttctatgaagctccaatcttcaccatcccaggcagaacgtatccagtg
gaggtgctttacaccaaagagcctgagacggactacctggatgccagtctcatcaccgtc
atgcagatccatctgactgaacctccaggtgacgtcctggtgtttctgacgggacaggag
gagatcgacacggcctgtgagatcctgtacgagcggatgaagtcgctgggcccggatgtg
cctgagctcattattctgcccgtttactcggccctgcccagcgagatgcagaccaggatc
tttgacccggcaccaccaggcagcagaaaggtggtcattgccacaaacatcgcagagacg
tctctgaccatcgatgggatttactatgtggtcgaccccggctttgtcaagcaaaaagtc
tacaactccaagactggtatcgaccaacttgtggtgactcccatctcacaggcccaggcc
aagcagagggcgggtcgagccggcagaacgggcccagggaaaacgtacaggctctacaca
gagagagcctacagagatgagatgctgacgaccaacgtgcctgagatccagagaaccaac
ttggccagcacggtgctgtctctgaaggccatgggcatcaatgacctcctgtccttcgac
ttcatggacgctccccccatggagactctgatcacagccatggagcagctctacactctg
ggagctctggacgatgaaggtttactcaccagactcggcagaaggatggctgagtttcct
ctggagccgatgctgtgtaagatgttgatcatgtccgtgcatctgggctgcagtgaggag
atgctcaccatcgtgtccatgctgtctgtgcagaatgtcttctatcggccaaaggacaaa
caagccctggccgaccagaagaaggcaaagttccaccaacctgagggagaccacctgact
ctgctcgctgtctacaactcctggaagaacaacaagttctccaacccctggtgttacgag
aacttcatccaggcccgctccctgcgccgagcccaggacatccgcaaacagatgctgggt
atcatggacaggcataagcttgatgtggtgtcttgtggaaaagccacggtccgagtccag
aaagccatctgcagtggtttcttcaggaacgcggccaaaaaggatcctcaggagggctac
agaacgctgatagaccagcaagtcgtgtacattcacccctccagtgctctgttcaaccgc
cagcctgagtgggtcgtctaccacgagttggtgctgaccaccaaggagtacatgcgagag
gtgaccaccatcgacccccgctggctggtggagttctctccggccttcttcaaagtgtcc
gaccccacgcgcctcagcaagcagaagaaacagcaacgtctggagccgctgtacaatcgc
tacgaggagcccaacgcctggaggatctcccgcgccttcagacgccgttga
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