Hippoglossus stenolepis (Pacific halibut): 118103216
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Entry
118103216 CDS
T08308
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118103216 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118103216 (lig4)
Enzymes [BR:
hsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118103216 (lig4)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
118103216 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
118103216
NCBI-ProteinID:
XP_035005814
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All DBs
Position
24:2626728..2630912
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AA seq
910 aa
AA seq
DB search
MEGPSTSDAAAEPSVGAQVPFLHLCTTLEKIQKSKLRPDKSKILRDFMESWRKFHSALHK
DNPKTTDSFYPAMRLVVPSFERERMAYGIKENMLAKLYINVLGLPQNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGSLSIKEVNDFLDSVAINNGSKQKDLVKKSLLHII
TQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAEFYNVNTDLNKVCQQLHDPSLSL
SEASIGLFSAFKPMLAAMANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFTRNA
FEYTQQFGGSPLEGSLTPHIHNVFKSHVVNCILDGEMMAYNSTTETFMQKGSKFDIKKLM
DDSGLQTCFCVFDVLLINNQKFGNETLKKRYEVINTVFTPVKGRIQLVQKSDARTMQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCGVAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
ASILCATEKPEVYIEPCNSVIIQVKAAEIVGSDMYRTSCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKALGKLASRHLSINNEEPQKKKRKVAPKPKKVVGLIDHFKPQDLSGVTKET
DMFEDVEFCILNGTEDHPKAELEKGVVRCGGIVVQNPGRDTYCVVAGVENMRVKNLISAN
KHDMVWASWLLECLQQKEVVPWQPHHMIHMSPSTREHFAKEYDSYGDSYHVDTDEQQLRE
VFNRIGSGNQQAAANVGQVEQHYSWDDLPTSMFRPFRVYMDSCADVGETKTAIAGSCLDI
RALEFRYHGGRVEQKLEEGVSHVIITEETRLLVLRTLRRSFMKKFKIVRDSWVSDSIKAG
YVMNDNNYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggaccttccacgagtgacgctgctgcagaaccgtctgtcggagctcaggttcct
ttccttcacctgtgcaccactctagagaaaatccagaagtctaaactccgtcctgataaa
tccaagatcctcagagatttcatggagtcgtggaggaagtttcactcggccctccacaaa
gacaatcccaagaccactgactcgttctacccagccatgcgcctcgtcgttccctcgttc
gaacgagagcggatggcttatggcatcaaggagaacatgttggcgaaactctacatcaac
gtgttaggcctcccacagaacggcccagaggccaataagctgttgaactacagagctccg
accacgtcccagggggaagctggagactttgcgggcatggcgtactttgtgctgaagaag
cgatgcaccagccaaggaagcctcagcatcaaagaagtcaacgactttctggactcggtg
gcgatcaacaatgggagcaagcagaaggatcttgtgaagaagagtctgctgcacatcatc
acccagagctccgccctcgagcagaagtggctcatcaggatgattctgaaggacatgaag
ctcggggtcagcaaagaaactgttctccaagtcttccacccagatgctgctgaattctac
aacgtcaacacagacttgaacaaggtttgccagcagctccacgacccgtccttgtctctg
agtgaagcctccatcgggcttttctctgccttcaagcccatgttagcagctatggctaac
atccgcaatgtggagaaacagatgggcaacagccccttttacatccagaccaagctggac
ggggagcgaatccagctgcacaaagacggagacgtgtacaaatacttcactcggaatgct
tttgaatacacgcagcagtttggaggatcgccactggagggctcgctgacacctcacatc
cataatgtgtttaaaagtcatgtcgtgaactgtatcctcgatggggagatgatggcgtac
aactcgaccacagagaccttcatgcagaaagggagcaagttcgacatcaagaagctgatg
gacgactctgggttgcagacttgcttctgtgtgtttgacgtgttgctaatcaataaccag
aagtttggcaatgaaacgctgaagaagcgctacgaggtcattaacacagtgttcacgcca
gttaaaggaaggattcaactggtgcagaagagcgatgccagaaccatgcaagaggtggtg
aatgccctcaacgatgccatagacagccgagaagaggggatcatggtgaaggatccttta
tccatctacaaacccgacaaacgaggggaaggatggctgaagataaagccagaatatgtc
gatggcttgatggatgaactcgacctgctgatcgttggcggctactgggggaaggggaga
cgaggcggcatgatgtcccacttcttatgtggcgttgctgaggctccgaagcctggagag
aaaccctcagtgtttcactcgttctgtcgcatcggctccggctacaccatgaaggagctg
tacgaccttggtttgaagctcgccaagcactggaaggtttaccggaaaaatgacccccca
gcttccatcctgtgtgcaacagagaagccagaagtctacatcgagccctgcaattctgtc
atcatccaagtgaaggcggcggagatagtcggcagcgacatgtacagaaccagctgcacc
ctgcgcttcccaaggatcgagaagatccgcgatgacaaagagtggcaccagtgcatgacg
ctggcggagctggaccagttccgcagcaaggcgctggggaaactcgcctcgcgccacctc
agcatcaacaacgaggaaccacagaagaagaagcgcaaggtggcgcccaaacccaagaag
gtggtcggcctcatcgaccactttaagcctcaggacctctccggggttaccaaggagacg
gatatgtttgaggatgtggagttctgcatcctgaacggcaccgaggatcatcccaaggcc
gagctggaaaagggcgtcgtcaggtgcggaggaatcgtggttcaaaaccccggacgtgac
acctactgtgtggtcgccggcgtggagaacatgcgcgtcaagaacctgatttcggccaac
aagcacgacatggtttgggcgtcctggctgctggagtgcctgcaacagaaggaagtggtc
ccatggcaaccgcaccacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacagctacggcgacagctaccacgtggacacggacgagcagcagctgcgtgag
gtgttcaaccgcatcggcagcggcaaccagcaggcagccgcgaacgtcgggcaggtggag
cagcattacagctgggacgaccttcccaccagcatgttcagacccttcagggtttacatg
gacagctgtgctgacgtaggagaaaccaaaaccgccatagctgggtcctgtttggacatc
agggcgctggagttccgttaccatggaggcagagtggagcagaagttggaggaaggagtc
tctcatgtcatcatcacagaggaaacaaggcttctggttttaaggactttgaggcgaagc
ttcatgaagaagtttaagattgtgagagactcttgggtgagtgactcaatcaaagcagga
tatgtgatgaatgacaataattacttagtttga
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