Hippoglossus stenolepis (Pacific halibut): 118106376
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Entry
118106376 CDS
T08308
Symbol
usp47
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47 isoform X1
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hsp01002
]
118106376 (usp47)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118106376 (usp47)
Enzymes [BR:
hsp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
118106376 (usp47)
Peptidases and inhibitors [BR:
hsp01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
118106376 (usp47)
Ubiquitin system [BR:
hsp04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
118106376 (usp47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
118106376
NCBI-ProteinID:
XP_035010757
LinkDB
All DBs
Position
1:complement(14134740..14151802)
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AA seq
1385 aa
AA seq
DB search
MEMVPSEGNQFVSKEGDFRSCRQSIFDEMKKKISQIQNAAEEPRMLCIIQDTTCAKRVNE
RLTLNLPASTILSTLYKDVAQKAGYVSGTFGLVWGNTSEMEPLDHNREMSLSDSGFEPGG
KRNFLQLTDKDGEQPQIASDESGTADSSGLDDSSQERFIGPLPRDATAGCSGDYSSPSYS
YSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYNWEFEDLEEDPVTSIPFQ
LQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDIQELCRVMFDALEQKWKQTEQAD
LINQLYQGKLKDYVRCLECGYESWRIDTYLDIPLVIRPFGVSQAYGSVEEALQAFIQPET
LDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEEL
DMSPFIDMEDEKSPQTESCTDSGAENEGSCHSDQMSNDFSTDDCVDEGICLDSTGSTERV
LKPKSMLTFELFSVMVHSGSAAGGHYYACIKSFSDGQWYSYNDQHVSKITQDDIRKTHGG
SSGNRGYYSSAFASSTNAYMLIYRLKDPSRNAKYLTVEDFPEHIKSLVQKEKESEEQEKR
QREIERNTCKIKLFCMHPVKLMMESKLEVHKDKTLREATEMAYKLMELDGVATLDCCRLV
KYDEFHEYLERSYEGEEDTLMGLLLGGVKSSYMFDLLLETRRPEQVFQPYKPGEVMVKVH
VVDLKSETIASPISVRAYLSQTITEFKQLIAQAAGLSAEAMRVVLERCYNDLRLLYVPNK
TLKAEGFFRSNKVFVESSESTDHQVAFTDSVLWKLLDRHGNTIRLMVLLPEQSPGTLANR
TLCQKVGDDSDVPLDGSSGNRKSVEAILEESTEKLKNLSLLQQQQQLQQQGSSNSDSQKS
SDTSDFELIESPTQEADSNSSLCVAADNRELENRIRATAGSSGGASSDPCEERSDSEVNN
DRSTSSVDSDILSSSHSSDTLCNADSGPLQLANGLDSHSITSSRRSKAHEGKKETWDTAE
EDSGTDSEYDDHGKSKAEAQYLYFRTEPCSQDDSSLDAQKCLVVHVDKRITLAAFKQNLE
PYVGVTTTQFKVFRVYANNQEFESVRLNETLSSFSDDNKITIRLGRALKKGEYRVKVYQL
LVNETEPCKFLVDTVFAKGMTVRQSKEELLPQLKEHCKLDLSIDSVRLRKKTWKNPGTVF
LDYHVYEEDISISSNWEVFMEVLNEPEKMKSMSQLAVLTRRWSPATMKLGPFQEVILESS
SVEELKEKLSEMSVIPLENLDFAKGRGTFPCDISVLEIHQDLDWNPKVSTLNVWPLYICD
DGAVVFYRDSTEEPMELSEDQRNELMKKESSRLLKTGHRVSYSPRKEKALKIYLDGGPAK
DPGQD
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggagatggtgcctagcgaggggaaccagttcgtatccaaagagggtgattttcggagt
tgcagacaaagtatttttgatgagatgaagaagaagatttctcagatccaaaatgcagct
gaggagcccagaatgttgtgtatcatccaggacaccacctgtgcaaagagagtcaatgag
aggctgaccctaaacctgccggcttccacgatcctctccacactttataaagatgttgcc
caaaaagccggatatgtcagtggcacatttggccttgtctggggaaatacatcggagatg
gaacctctagaccacaaccgtgagatgtccctctcagattctgggtttgagcctggtggt
aagaggaatttcctccagcttacagacaaagatggagagcagccccagattgcatcggat
gagtcaggaacagcagacagcagtggactggatgatagctcacaggagcggtttattggg
cccctaccaagagacgccactgcaggctgcagtggtgactacagcagtccatcttactcc
tactcatccatcctcaacaaatctgagacgggttacgtgggcttggttaaccaagcaatg
acctgctatttgaacagtcttctacaaacactcttcatgacccctgagttcagaaatgca
ctctacaactgggagtttgaggatttggaggaggatccagtcaccagtatccccttccag
ctgcaaaggctttttgtcctgctgcagacgagtaagaaacgggcgattgagaccactgac
gtgacccggagcttcggttgggacagcagcgaggcttggcagcagcatgacatccaggag
ctgtgcagggtcatgtttgatgccctggaacaaaagtggaagcagacagagcaggctgac
ctgatcaaccagctctaccaggggaagctgaaggattatgtccgttgtctggagtgtggc
tatgagagctggaggattgatacttacctggacatccctcttgtgatcagacccttcgga
gtcagccaggcctatggcagtgtggaggaggctttgcaggcattcatccaaccagaaact
ctggatgggcccaaccagtacttctgtgaacgctgcaaaaagaaatgtgatgcccgaaag
ggtctaagatttctgcactttccctacctgctgacgctgcagctgaaacggtttgatttt
gactacaccactatgcatcgcatcaagcttaatgaccgtatgactttcccagaggagctt
gacatgagtccattcattgacatggaagacgagaagtcgcctcagacggagagctgcact
gacagtggagcggagaatgaaggcagttgccacagcgaccagatgagcaatgatttttcc
actgatgattgtgtggatgagggcatctgcttggacagcaccggcagcacagagagggtg
ctgaagccaaagagtatgctgacctttgagctgttctccgtcatggtccattctgggagt
gctgctggtggccattactatgcctgcatcaaatccttcagtgatggccagtggtacagt
tacaacgatcagcacgttagcaagatcacccaggatgatatcagaaagacacatgggggg
tcctcagggaacagaggctattattctagtgcctttgcaagctccacaaatgcatatatg
ctgatttatagattgaaagatccctcaaggaacgcaaagtatttaaccgtggaagacttc
ccagagcacatcaagagtctagttcagaaggagaaagagtctgaagagcaggaaaagaga
cagagggagattgagcgcaatacctgcaagatcaagctgttctgtatgcatcctgttaag
ctgatgatggagagcaagctggaagttcacaaggacaaaacgctcagagaagcaacagag
atggcctacaagctgatggagctggacggggtcgccactcttgactgttgtcgcttggtc
aagtatgacgagttccacgagtacctggagcgctcttatgagggtgaggaggacacactg
atgggtctcctgttgggtggtgtcaagtcctcgtacatgttcgacttgctgctggagacc
cgccggcctgagcaagtgttccagccttacaaacctggagaggtgatggtgaaggtccat
gttgtggatctgaagagtgagaccattgcctctccaatcagcgttcgggcgtacttgagc
cagacaatcactgaattcaaacagcttattgcacaggctgcagggctatcagcagaagcc
atgcgtgtggtccttgagcgctgctacaacgacctccggctcctctatgttccaaacaag
accttgaaagctgagggattcttcaggagtaacaaggttttcgtagagagctcagagtcg
acggatcatcaggttgctttcactgactcagtcttgtggaaactgttggatcgtcacggg
aacacgatccgactcatggtcttgctgcctgagcagtcacctggtactttggccaacaga
actctttgccaaaaagtgggcgatgactctgatgtgcccttggatgggtccagtggtaac
aggaagtctgtcgaggcgatactggaggagagcactgaaaagttaaagaatctgtctctg
ctgcagcagcagcagcagctgcagcagcagggctccagcaacagcgacagccagaaaagc
tctgacaccagcgactttgaactcattgagtctccgacccaagaggctgactcaaactcc
tcgctgtgcgtcgccgcagacaacagagagttggagaaccggattagggccacagctggc
agcagcggcggtgcctcctctgacccctgtgaggagcgctcagactctgaggtgaacaat
gaccgcagcaccagctcagtggacagcgacatcctcagctccagccacagtagtgacaca
ctttgtaatgcagacagcgggcccttacagttggccaatggcctggactcgcacagcatc
acgagtagccggcgctccaaagctcacgagggcaaaaaagagacgtgggacactgctgaa
gaagactctgggaccgatagcgagtacgacgaccacgggaagagcaaggcggaggctcag
tacctgtacttcagaacagaaccttgttctcaggatgactcctcgttggatgcacaaaaa
tgtttagtagttcacgtggacaagagaataacattagcagcgtttaaacagaatctggag
ccctacgttggagtgacaacgacgcagttcaaggtgttccgggtgtacgccaacaaccag
gagtttgagagtgtgcggctaaacgagacgctctcatcgttctctgatgataataagata
accattcgactgggtagagcactgaaaaagggtgaatacagagttaaagtgtatcaacta
ctagtaaatgaaacagagccctgcaagttccttgtggacacggtgtttgccaagggcatg
actgtcagacagtccaaggaggagctgctccctcagctgaaagagcactgcaagcttgac
ctcagcattgacagtgttcgtctcaggaaaaagacgtggaagaatccaggaacagtgttt
ctcgattaccacgtctatgaggaggacatcagcatctcctctaactgggaagttttcatg
gaagtccttaatgaaccagagaagatgaagtccatgtcgcagctcgctgttttgaccagg
agatggagcccggccacgatgaagctgggaccttttcaggaagtgattctggagagcagc
agtgtagaagaactgaaggagaagctcagtgaaatgagtgtgattcctcttgaaaacctg
gattttgcaaagggtagaggaacgtttccttgtgatatttctgtgttggagattcatcag
gatttggactggaaccctaaggtgtcgactcttaacgtgtggcctctgtacatctgtgat
gacggagctgtcgtcttctacagggatagcactgaggagcctatggagctgtcggaggac
cagcgcaacgagttgatgaagaaggagagcagccgtctgctgaagaccggtcaccgtgtc
agctactcgccacgcaaggagaaagccctcaagatctacctagatggaggccctgccaaa
gacccggggcaggactga
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