Hippoglossus stenolepis (Pacific halibut): 118116688
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Entry
118116688 CDS
T08308
Symbol
fancm
Name
(RefSeq) Fanconi anemia group M protein
KO
K10896
fanconi anemia group M protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
118116688 (fancm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118116688 (fancm)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex
118116688 (fancm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FANCM-MHF_bd
DEAD
Helicase_C
ResIII
ERCC4
Motif
Other DBs
NCBI-GeneID:
118116688
NCBI-ProteinID:
XP_047197696
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All DBs
Position
10:10642843..10687679
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AA seq
2083 aa
AA seq
DB search
MSAGSNQRTLFQTWGSAAPQNKSAQPRKDGVKAAGRRRTTPSNSSQVPATLPPPNPLWTE
IGQGSSHPAQTPVRTGEPCADEDDDDDLMVVAVYEAEKSLRLDNANFPQDDNPAGAEASA
GSPAPSAGQTYPELPGFDSSSAKVWIYPTNYPLREYQLKISEAALFHNTLVCLPTGLGKT
FIASVVMYNFYRWYPSGKIVFMAPTKPLVAQQIEACYKVMGTPQAHMAELTGSTAAKQRQ
AIWRSKRLFFLTPQVMVNDLSRGTCPAQQVKCVVIDEAHKALGNHAYCQVIRQLGSQTLQ
FRILALSATPGGDTKSVQSVISNLLISHIELRSEESPDIRAHSHQRSVDKVVVPLGEALS
AHQARYLQVLEKFMSRLVQNRVMAHKDLRTLSKYQLILARDQFRKNPPPQLKGPQQGMLE
GDFALCISLYHGYELLMQMGLRSLFFYIQGIIDGSREMSRARNELQRTPTFMDLYHEMKD
MFVKPSAGPDEPFIYSHPKLEKLEGVVLQHFRQWAESSAHNDALGAESTRVMIFSSFRES
VQEIADMLNRQAPMIRVMTFMGQASAGKGVKGFTQKEQLEVVHRFRQGGFNTLVSTCVGE
EGLDIGEVDLIVCFDAQKSPIRLVQRMGRTGRKRQGRIVVIVAEGREERTYNQSQSNKRS
VHKSITGNHSGFHMYPNSPRMLPDGVHPTLHKMHITCGQFDHKESSRASVGGRRSHCDSR
TSLIHPRNLFQQSRATSDGFLSSAEYSLWASTMRLQDGEAHPTLKQSHFVSIPSDLPPQE
EHGKSGAPSRELCLWEWRHWQHKELPTHVVDHSLRCRHFIQVMELVDGMKEENEGECHYE
QELLPYLHNANTGGDMRKGQKKQKSVKTSAQKPKPSHSTSDLECMEEVESDFTDHPAPDA
ICPLPSKNDCPEADLDDDCVIIKESVINSDIISQLSTNIDEEDVELEAMFYLPKWDSAPP
PSSAELLPGTCERLKVILANVAELLSRPPLLPPAELEADMAAPSLPPPHQQLLQPFHVSF
TLDIDDDDDDDEMLMSEADNASPRTVSYQHPAGEEDSKNCIDPPHQGQTPVRVAAISPTW
DEVFGEEEANMEADDEMNNNFKKQQIGEEAEKSKEIKNNSDNTSEEKVLWDNVRTEETPH
STVGGVSVNRASRCSPHMDDSMDLFGDDEAFLQMTIPDIPTPGVTPGRSTCAADVSDNIK
RKSDPSQMQNTTDLFSTVPTADSRQILHTMQTDGLECTKHVTHTPHAKLKTHDAAACNNR
DKLISAHCKSPTVQQNAESCDRSHDYFSVNFDLGYSLEDSEDEADVEAVPALCTLSSPEP
KKQAADSPASLSTVSNSSTPYNRFSAQRIPAQCHESKLSTPRKFSVQRNREMSPLLTFKS
GALPSPITSVGARRTLVPGPFRPHAPSLLSSSKHRRPAGCAAEVKGGSGAENESLQESVW
VSDSPPHPEGSNNDSEEEVVVLKRRHQNVFNNLSSPEVSKISDVDSPVVVNRKRAAPLNT
SDETEGEAVSDDDFQNESVFARRTPAQGGERKRVRRAEAKHAACRKGRQFLQEEAELSGD
EEGADVSSDEEDGDDQNQSLDGFVVNNTHFSQGLNDSEMHGVYLKSVRSPAVHGKFKMSY
RTHRTDIFSQVPELDETYAEDSFVVGSEVEEVESSEEEAEDVQLMPDDSYVDGKRQYATR
RRVLLHNVRARARPGGKIAAEASSEQRAEEKTKRTRIIRVNDSSDEETGEVSEESLTAGG
SVAVTSRQKAAQPEPSRHQQQKAPSSSSSTIASKVSLLSKGRRSSESEEQLNERCCQRLE
NQHLLSDELDFEKSVSPLTSKNPPKAPPTTSSAPQPRGSVCQGASVSEAPAPPGSVCILV
DSRCISTGVELMTSLRQRHAATVHVCSLDGSYFIVSNRMAVEKHSQLDLAAMQNRKRLVE
RVNSLQGLFERVCLIVEKDRSKPGEASRPFQRTRFYDGTLAGLVRTGVRLLWSDGAEESA
SLLADLARLEQRKGQGISAPLEVRGQHKQQALQLYLSLPSVSFVHALNMSHNFKSVAQLM
NSSIEAIQKGGCMSTSRAEEIYRFLRYPCDTFLMNTSKAGKNS
NT seq
6252 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccggttccaaccagaggactttgttccagacgtggggctccgccgcgccccaa
aacaaatccgctcaaccgaggaaagatggcgtgaaagccgctggacggcgcaggacaacc
ccgagcaactcatctcaggtccccgcaacacttcctcctcctaaccccctgtggactgag
atcggtcaggggtcctcacacccggcgcagaccccagtgaggacaggggagccctgtgca
gatgaagatgacgacgatgatctcatggtggttgctgtctacgaggctgaaaagagcctg
agacttgacaatgcgaactttccccaagatgacaaccctgcaggagcagaggccagtgcc
gggtctccagccccatcagctgggcagacatacccagagctccccggctttgacagctcc
tcagctaaagtgtggatctaccccaccaactaccccctcagggagtaccagctgaagatc
tcagaggcggctctgttccacaacacgctggtgtgtctgcccactggtctggggaaaacc
ttcatcgcctctgtggtcatgtacaacttctaccgctggtatccatcggggaagatcgtg
ttcatggcccccaccaaacccctggtggcacagcagatcgaagcctgctataaagtgatg
gggaccccacaggcccacatggctgagctgacaggcagcacagcagcaaagcagagacag
gcgatatggaggtccaagcgcctcttcttcctcacccctcaggtgatggtgaacgatttg
tccagaggcacctgcccagcgcagcaggtgaagtgtgtggtgatcgatgaggcccacaag
gcgctgggcaaccacgcttactgtcaggtgatcagacagctcgggagccaaactctgcaa
ttccgcatcctggccctgagcgcaaccccagggggggatacaaagtcggtgcagtcggtg
atctctaatttgctcatctcccacatcgagctgcgttcagaggaaagccctgacatcagg
gcccactcccaccagcgcagcgtagataaagtggtggttcctctgggagaggccctctct
gctcaccaggcgcgctacctgcaggtgctggagaaattcatgtctcgtctggtgcagaac
cgggtgatggctcataaggacctgaggactctcagcaaataccagctcatcctcgccaga
gaccagttccgcaaaaacccacccccgcaactcaagggtccacagcaggggatgctggag
ggcgactttgccctctgcatcagcttgtaccacggatacgagctgctgatgcagatgggc
ctgcgatcgctcttcttttacatccagggaatcatagacggatccagagagatgtccagg
gcgaggaatgagctgcagaggacccccaccttcatggacctctaccatgagatgaaagat
atgtttgtgaagccgtctgctggtccagatgagccgttcatttatagtcaccccaaactg
gagaaactggaaggggtggtgctgcagcatttccgacagtgggctgagagctcggcacac
aatgatgctcttggggcggagagcacgcgggtgatgatcttctcatctttccgggaaagc
gtgcaggagatcgccgacatgttgaaccgccaggctccgatgatcagggtcatgaccttt
atgggccaggcgtctgctgggaagggggtcaaaggcttcacccagaaggagcagctggag
gtggtgcacaggttccgtcagggaggcttcaacacgctggtgtcgacctgcgtgggggaa
gaggggctggacatcggagaggtggacctcatcgtttgcttcgatgcgcagaagagtccc
attcgccttgtgcagcgaatgggacgtactggccgtaagcggcagggacgcatcgttgtc
atcgtggctgaaggacgcgaggagagaacatacaaccagagccagagcaacaagcgcagt
gtgcacaagtccatcactggcaaccacagtgggtttcacatgtatcccaacagtccccgc
atgctgccagacggagtgcaccccaccctgcacaagatgcacattacctgtggccagttt
gaccacaaggagagcagcagggcgtctgtcgggggtcgacggtcccactgtgacagccgg
acctccctcatccaccctcggaacttatttcaacagagcagggcaacatctgacgggttt
ctgagcagtgcagaatattccctgtgggcgtccaccatgaggctgcaggatggtgaagct
catccaaccctgaagcagtcacactttgtgtccatacccagtgatctacctcctcaggag
gaacatggcaaaagtggcgccccgtccagagagctgtgtttgtgggaatggagacactgg
cagcacaaagagttgcccacccacgtggtcgatcactccctccgctgccgccacttcatc
caggtgatggagctcgtagacggcatgaaagaggagaacgagggggagtgccattacgaa
caggagcttcttccttacctccacaatgccaacacaggtggcgacatgagaaaaggacag
aagaagcagaagagtgtaaagaccagcgctcaaaaacccaaaccgtctcattcgacatct
gatctggaatgtatggaggaagtcgagagcgacttcacagatcacccagcgcctgacgct
atttgtcctctcccttcgaaaaatgactgtccagaagctgacctggatgatgactgtgtc
atcattaaagaaagtgtcataaattcagacattatttcccagctgagtacaaacattgat
gaggaagatgttgagcttgaggccatgttctaccttccgaagtgggattcagctcctcct
ccctcctcggctgagctcctgccaggtacatgtgagcgtctgaaggtcattctggccaac
gtagccgagctcctctctcgacctcctttattgccgcctgcggagttagaggccgatatg
gcagctccgtcacttcctccccctcatcagcagcttcttcagccatttcacgtcagcttt
accctggatatagacgacgacgacgatgatgatgaaatgctgatgagcgaagccgacaat
gcctctccgaggacggtctcataccagcatccagcaggtgaggaggacagtaaaaactgc
attgatccgcctcatcaggggcaaacgcctgttcgtgtagcagccatcagtcccacctgg
gatgaggtgtttggggaggaagaagccaacatggaggcagacgatgaaatgaacaataac
ttcaagaagcaacagattggcgaggaagctgagaagagcaaggaaataaagaataactcc
gacaacacgagcgaggaaaaggtcctctgggataatgtgaggactgaggaaacgccacac
tcgacggttggaggtgtgagcgtcaacagggcctctcggtgcagccctcacatggacgac
agcatggatctgtttggggacgacgaagccttccttcaaatgaccatcccagacatcccc
actcctggcgtcacacccgggaggtccacttgtgccgcagacgtttccgacaacataaaa
aggaagtctgacccgtcacaaatgcagaacacaacagacctgtttagcactgtgcccaca
gcagacagcagacaaatattacacacaatgcaaacggatggtttagaatgcacgaagcac
gttacgcatactccgcatgccaagctaaaaactcatgatgcggccgcttgtaacaataga
gataagttaatttcagctcactgcaaatctcccacagtgcagcaaaacgctgagtcatgt
gataggtcccatgactacttctctgtcaactttgaccttggttattccctggaggactca
gaagacgaagcagacgtagaggccgtccctgccttgtgtacgttgtcctctccagagcct
aaaaagcaggcagctgactccccagcttcgttgtcgaccgtttctaactcctccactccc
tataacaggttcagtgcacagagaatccccgcacagtgccatgaatctaaactgtccaca
ccccgaaagttttcagtgcagaggaacagggaaatgtcgcctcttctgacgtttaagagt
ggcgctctcccctctcccatcacatcagtgggagcgaggaggacgctcgtgcccggtcca
ttcaggcctcacgcgccctctttgctctccagctcgaaacatagacgaccggcgggttgc
gccgctgaggtcaaaggagggtcaggtgcggagaacgagtcacttcaggaatcggtttgg
gtgtctgactcaccccctcatccagagggatccaacaatgacagtgaagaggaagttgtg
gttcttaaaagaagacatcagaatgtattcaacaacttgtcgtccccagaagtgtccaag
atcagtgacgtggactctccagtggttgtgaacaggaaacgtgcagctcctcttaacact
tctgatgaaacagagggcgaagctgtttctgatgatgatttccagaacgagagcgtgttt
gcacggcgaaccccagcgcagggaggcgagaggaaacgagtcagacgggctgaagccaag
cacgccgcgtgtcgcaaagggcgtcagttcctgcaggaagaagcggagctgtcgggggat
gaagagggggcagacgtgtcgtctgatgaagaggatggagatgatcagaaccagtctctt
gatggatttgtggtcaacaacacacacttctcccagggactgaatgactcagagatgcat
ggggtttacctgaagtcagtgagaagccctgcagtccacggcaagttcaaaatgtcttac
agaacccatcgcactgacatcttctcccaggtgcctgagttggatgaaacgtatgccgag
gacagctttgtggtcggcagtgaggtggaggaggtggagagcagcgaggaagaggctgag
gacgtccagctcatgcctgacgactcgtacgtggacggtaaaaggcagtatgccaccagg
cggcgtgttttactgcacaacgtcagagcgagagccagacccggaggtaagattgcggcc
gaagcttcttcagagcagagagctgaggagaaaaccaagcgtacccggatcatacgcgtg
aatgattccagtgatgaggagacgggtgaagttagcgaagagagtcttacagcagggggc
agtgttgctgtcacctcgcggcaaaaggcagcacagccggagcccagcaggcatcagcag
cagaaagccccctcctcctcgtcgtcaaccatagcatctaaggtctcactgttgagtaaa
ggacgaaggagctccgagagtgaagaacagctaaatgagaggtgttgccagaggttagaa
aaccagcatctcctctctgatgagctcgactttgagaagtcagtgtcgccgttaacctcc
aagaatccacccaaggccccacccaccacctcctcagcgcctcagccccgggggtccgtc
tgtcagggtgcgtcagtcagcgaggcccctgctcctcccgggtctgtttgcattctggtg
gacagtcgctgcatcagtaccggagtggagctgatgaccagcctgcgtcagcggcacgca
gccaccgtccacgtctgctccctggacggcagctacttcatcgtcagcaaccgcatggcg
gtggagaagcacagccagttggatctggcagcaatgcagaaccggaagcgattggtcgaa
agagtgaacagcttacagggattgtttgagcgcgtttgtctgattgtggagaaggaccga
agtaagccaggtgaagcgtcacgtccgtttcagcgcacacgattctatgacggcacgtta
gcggggctggtgcgcaccggggttcgcctgctgtggagcgacggcgccgaggagagcgcc
agcttgctggcggacctggctcggctggagcagcgtaaaggtcagggcatcagtgcaccg
ctggaggtcagagggcagcacaagcagcaagccctgcagctgtacctgagcctgccttca
gtcagcttcgtccacgctctgaacatgagccacaacttcaagtccgtcgcacaactgatg
aacagctccattgaagccatacagaaaggaggctgtatgagcacgtccagagctgaggag
atctaccgcttcctgcgctacccttgtgacactttcctcatgaacacatcaaaagcagga
aaaaacagttag
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