Hippoglossus stenolepis (Pacific halibut): 118117512
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Entry
118117512 CDS
T08308
Symbol
tnn
Name
(RefSeq) tenascin-N isoform X1
KO
K06252
tenascin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118117512 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118117512 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118117512 (tnn)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118117512 (tnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_2
EGF_Tenascin
Arylsulfotran_N
DUF460
PA14
EGF
hEGF
Motif
Other DBs
NCBI-GeneID:
118117512
NCBI-ProteinID:
XP_035025673
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Position
11:13537161..13572599
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AA seq
1116 aa
AA seq
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MPTRLLRRALCLWALLSTVSHLSYADNQADPSAPEQGVTFSHVYKIDMPGSSSCKLESQD
ESGLQTETTTNGQNDIIFRHNIRLQTPKCDCAESDSFKSLLYRVNGLEEEVNYLKTQCTQ
GCCGTGGAVGVDTSCSGHGTYQHDTCSCLCNPGWEGPDCSVSSCPDECNDNGRCVDGKCV
CQQGYTGDDCGQLTCLGNCSDKGRCVDGKCVCFPHFSGEDCSVAKCPNDCSANGRCVDGQ
CICDEGFYGEDCSSVFGPQGLRVVQVTDVSLLVEWESVRGAEYYILTYHPKGAGALEQVR
IPNTKNSYLITGLTPGVTYIVQVYAVIKEIHSDADKIEATTDVSAIDDIQVLGQTEVSIL
VDWKNPPAEVDHFKLTHTDPEGQEEELNVQGSQEARTKHTIVGLYPGTEYLISVQAIKGT
TEGKTSSVTGATDNDAPKNFVTTQVTEDTATVSWDRVQAEIEGYMLSYTSAEGSSPEISV
GRDSTSYRLVGLRPGVVHTVYIWSYKGYKVSRKSSTEAETDLDAPTNVLARDETESSFRV
SWDHTQAAVDGYVLTYSSSEGSSAEIPLGSDSNSHMLTGLKPGVLYTVYIWAVKGGKVSR
KISTQAVTELDAPANLLARDETESSFSVSWDPVQAEIDGYVLTYSSSEGSSGEIPVGPDR
TSYSLNGLRPGVIYTVYVWAVKGNKVSRKTSTQSETDRDAPANLLARDETESSFSVSWDR
VQAQIDGYILTYSSSEGSSGEIPVGPDSISYTLTGLRPAVLYTVYVWAFKGGKVSRKIST
KAETDIDAPKDLKATDVTLDSASLTWIPPLADIEGYNLTYRDEEGNMETVEKQLGAIVSS
FAVSSLETGKRYIVTLIAYRGSKRSRVVETIFKTVGFLYPFPMDCVQIMKNGNKKSGIYT
IFINNNSSKPIEVFCDMDTDGGGWLMLQRRTTGKLDFLKRWRQYIAGFGNMTDEFWIGLD
KIYELTNTPTQYELRFDLGLGSERVYAVYDNFKIDPVKQKFKLTIGKYSGTAGDAMTYHQ
GRAWTTIDSDNDISLGNCALTHRGAWWYQNCHLANLNGKWGDSRHSLGVNWEPWKGHLTS
LDFTEMKIRPLGALSSRKRRSLLAREKSRNTNLQKK
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgcccactcgactcctgcggagggccctgtgcctgtgggccctgctcagcaccgtctcg
cacctcagctacgccgacaaccaagcagacccctcagccccagagcagggagtcaccttc
agccacgtctataaaatcgacatgccagggagctccagctgtaaactggagagccaggac
gaatcaggtctgcagacagagacgactacgaacggacagaacgatataatcttcagacac
aacataaggctgcagacgcccaagtgcgactgtgcggagtctgacagtttcaagtctttg
ttgtacagagtcaatgggctggaagaagaagtcaactacctaaagacccagtgtactcag
ggctgttgtggaacaggtggtgctgtaggtgtggacacaagctgcagtggccatggtacc
taccaacacgacacctgcagctgcctctgtaacccgggatgggaaggccccgattgctca
gtgtcctcctgcccagatgagtgtaatgacaatggccgatgtgtggacgggaagtgtgtt
tgccagcagggctacacgggagacgactgcggccagctgacatgtctgggcaattgcagc
gacaagggacgctgcgtggacgggaaatgtgtgtgtttcccgcacttcagtggcgaagac
tgcagcgtagccaagtgtcccaatgactgcagcgctaatggccggtgtgtggacggccag
tgcatctgtgatgaaggcttctatggagaggactgttcatcagtgtttggacctcagggt
ctgcgggtggtgcaggtgacggacgtctctctcctggtcgagtgggagtcagttcgtggg
gcagaatattacattttgacatatcatcccaaaggtgctggagccctggagcaggtgcgg
attcccaacacaaagaactcctacctcatcacagggctgactcctggggtcacttacatt
gtccaggtgtacgcagtcatcaaagaaatccacagtgacgcagacaagatcgaggctaca
acagatgtctcggccatcgatgatattcaggttcttggccagacagaagtgtctatcctg
gtggactggaagaacccaccagctgaagtggatcacttcaagctcacacacactgacccg
gagggacaggaggaggagctgaatgtacagggcagccaggaggcgcgcaccaaacacact
atagtcggtctgtatccaggaaccgagtacctgatctcagtgcaggccatcaagggaaca
actgaggggaagacgtcctctgtcaccggggccacagacaacgatgctccgaaaaacttt
gtcaccacccaggtaacagaggatactgcaacggtttcctgggatcgagtccaggcagaa
atcgagggctacatgctgagctacacctccgctgagggctccagcccggagatctccgta
ggccgtgacagcacctcgtacaggctggttggcttgaggccgggagtcgtccacacagtc
tacatctggtcctacaagggatacaaagtcagcaggaagagttcgacagaggctgaaaca
gacctggatgcccctactaacgtcttggcccgcgatgagacagagtccagtttcagggtg
tcctgggatcacactcaggcagcagtcgacggctacgtcctcacctacagctcctctgag
ggctcaagtgcagaaatcccacttggatctgacagtaactctcacatgctgactggcctg
aagcccggcgtcctctacaccgtctacatctgggccgtcaaggggggcaaagtcagcagg
aagatctcaacacaggctgtgacagaactggacgctcccgctaacctcttagcccgagac
gagacagagtccagcttcagcgtgtcctgggatccggtccaggcagagatcgatggctac
gttctaacctacagctcctctgaaggatctagtggggagatcccagtcgggcctgacaga
acctcttacagtctgaatggcttgaggccgggagttatctacactgtgtacgtctgggct
gtcaaggggaacaaagtcagcaggaagacctcgacgcaatcggagacagaccgcgacgct
cctgctaacctcttagcccgagatgagacagagtccagcttcagcgtgtcctgggatcgg
gtccaggcacaaattgatggctacatcctaacctacagttcctctgagggctctagtgga
gaaatcccagtcgggcctgacagtatctcttacacgctgactggcctgagacctgcagtt
ctctatactgtctacgtctgggctttcaagggaggaaaagtcagcaggaagatctcaacc
aaagctgagacagatatcgatgcccccaaggacctgaaggctacggatgtgacactggac
tctgcctctctgacctggattcctcctctggcggacatagaaggttacaacctcacctac
agagacgaggaaggcaacatggagactgttgaaaagcagctcggagccatcgtgagcagt
tttgctgtgtccagtctggagacggggaagagatacatcgtcaccctcattgcctacaga
ggcagcaagaggagtagggtggtggagacgatctttaaaacagttggcttcctatacccc
ttccccatggactgcgttcagatcatgaagaacggaaataagaaaagcggaatctacacc
atctttattaacaacaacagctccaaaccaattgaggtcttctgcgacatggacactgac
ggaggcggctggctgatgctgcagcgccgtacaaccggcaagctggacttcctgaaacgc
tggaggcagtacatcgcaggttttggcaacatgacggacgagttctggatcgggctggat
aagatatacgagctcaccaacactccgactcagtacgagctgcgatttgacctgggcctg
ggctcagagagggtctacgctgtgtatgacaactttaagatcgatccagtcaagcagaag
ttcaaactcaccatcggcaaatacagcgggacagcaggtgacgccatgacctaccaccaa
ggccgagcctggaccactatcgactcagataatgacatctctctgggtaactgcgccctg
acccaccgcggcgcctggtggtaccaaaactgtcacctggccaacctgaacggcaaatgg
ggagacagccgacacagtttgggggtgaactgggagccgtggaagggccacctgacgtcc
ctcgacttcacggagatgaagatccgacctctgggagccttgtccagcaggaagaggcga
tcgttgttggccagagagaagagcagaaacacaaacctccaaaagaaatag
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