Hippoglossus stenolepis (Pacific halibut): 118117535
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Entry
118117535 CDS
T08308
Symbol
lig1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03030
DNA replication
hsp03410
Base excision repair
hsp03420
Nucleotide excision repair
hsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118117535 (lig1)
03410 Base excision repair
118117535 (lig1)
03420 Nucleotide excision repair
118117535 (lig1)
03430 Mismatch repair
118117535 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsp03032
]
118117535 (lig1)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118117535 (lig1)
Enzymes [BR:
hsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118117535 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
118117535 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
118117535 (lig1)
DNA replication proteins [BR:
hsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
118117535 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
118117535 (lig1)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
118117535 (lig1)
NER (nucleotide excision repair)
Other NER factors
118117535 (lig1)
MMR (mismatch excision repair)
Other MMR factors
118117535 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
118117535
NCBI-ProteinID:
XP_035025717
LinkDB
All DBs
Position
11:complement(21781489..21825693)
Genome browser
AA seq
1010 aa
AA seq
DB search
MQRSIASFFQPKSKDKGAQKKPADKPVKKPVKTPLKVQNGAPEADSPIKKVAKRSRQILD
SDEDEAPVVKERVADKGQGDKEDSNKSEKKDDVFKAVPTPLSPPPAPTTPATPATPATPA
TXASSASPGTPSTPNSTSPSEIVKRKTARKMFPKRKLDESRSSSESQKEEAEEKEERGQQ
KKRPRMEPVADGAGDAGEPMEEGAKEEDAEKAVTAANSQDEEVENKKKEDGEKAKEERRA
DGESCDEIEKKAEGAEKKKEAKEKSDDEKGPATAKKKEVVEKDTREGEESPKSQTAKEQK
DKEPAKKAPISSFFAPRKVAVKTEKVEKNDGEKKTSAERKSSAEETKDTKSESTSGQTDY
DPSRPGYHPVDHACWKQGQRVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDD
LLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESS
RSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFAEARYIVRSL
AGKLRIGLAEQSVLSALTLAVCLTPPGQDFPPAVIDAGKGMSAESKKAWIEEKSLILKQT
YCEMPNYDILLPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVLKRFDEAAFTCE
YKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDAEAVAWD
REKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLKESF
SEVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLKKDATYEIAKRSHNWLKLK
KDYLEGVGDTMDLCVIGGYMGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDEDLE
QHYKFLKDHILPKPRAYYRFDQSAEPDVWLDAMQVWEVKCADLSLSPIYKAAMGLVDPVK
GISLRFPRFLRIRDDKKPEDATSGAQIADLYKKQQQIQNQGDKADPEDYY
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttcttccagcccaagagcaaagacaagggtgctcagaag
aaacccgcagataaaccggtgaaaaagcctgtgaagactcctctcaaggtgcagaacgga
gcgccagaggctgattcccccatcaagaaggttgccaagcgcagccgtcaaatcctggac
agcgacgaagacgaggcacccgttgttaaagagcgagtcgccgacaagggacaaggagac
aaagaagactccaataaatcagaaaagaaggacgatgtgttcaaggcagtgcccacccct
ctgtctccacctccagcccccaccaccccggcaacaccagccaccccagccacaccagcc
accnccgcctcatcagcgtcaccggggacccccagcacgccaaactcaacctccccgtct
gagatcgttaaacgcaagacagcgagaaagatgttccccaagaggaagctggatgagagc
aggagcagcagcgagagtcagaaagaggaggccgaggaaaaggaggagcggggtcagcaa
aagaaacgaccccgcatggagcccgtcgccgacggtgcaggggacgccggtgaacccatg
gaggagggcgcaaaggaagaggacgctgaaaaggcagtgaccgcagctaacagccaggat
gaagaggtggagaacaagaagaaagaggacggagagaaggccaaagaggagaggcgggcg
gacggagagagctgcgatgagatagaaaagaaagctgagggggcggaaaagaaaaaggaa
gcaaaggagaagagcgatgatgagaaaggtcctgccactgccaagaagaaggaggtggtt
gaaaaggacacgcgagagggagaagagagcccaaaaagtcaaacagcgaaagagcagaaa
gataaggagccggccaagaaagcccccatcagcagtttctttgctcccaggaaagttgca
gtgaagacggagaaggtggagaagaatgacggagagaaaaagacaagtgcggagaggaag
agttcagcagaggagactaaagacacaaaaagtgagtcaacttcgggacaaacagactac
gatccgtccaggcccggatatcatcccgtggaccacgcctgctggaagcagggccagagg
gtcccgtacttggctgtggctcgcacctttgagaagattgaagaggactctggcaggctg
agaaacatcgagacactgtcaaacctgctccgctctgtgctgctgctctctccagacgac
ctgctgtgctgtgtgtacctgtgtttgaaccagctgggtcctgcctacctggggatggag
cttggtgttggggagactgtgctgatgaaagctgttgctcaagcaactgggcgacaattg
gacaaaattaaggccgaggcgcaggagaagggagatttgggcctagtggccgagagttcc
cgtagcaaccagcgcatgatgttccaaccggccagcctgacagcagggggcgtgttcagg
aaattgaaggaaattgccagcatgagcgggaactcggccatgaataagaaaatcgacatc
atcaaaggcctctttgtggcatgccgcttcgccgaggcccgctacatagtcaggtccctg
gctgggaagctgaggataggcctggctgagcagagcgtcctatcagcactcactctggct
gtgtgcttgaccccacctggacaagatttccctcccgctgtgatcgatgcagggaagggg
atgagcgctgagagcaagaaggcctggatcgaagagaagagtctcatcctcaaacagact
tattgcgagatgcccaattacgacatcctcctccccgttctcctgaaagagggcatagac
cagctacccaatcactgcaagctcactccaggtgtgccgctgaggcccatgttggctcac
cccacgaagggcgttggcgaggtgctgaagaggtttgacgaggcggcgttcacctgcgag
tacaagtacgacggcgagcgtgcacagattcacattctggagagcggcgaggtgcgagtg
ttcagccgcaaccaggaagacaacaccagcaaataccctgatatcatctctcgcattccc
aaggtgaagaaggactctgtggtatcctgcgtcctggacgccgaggccgtcgcctgggac
cgtgagaagaagcagatccagcccttccaggtcctcaccacccgtaaaagaaaggacgtg
gatgcctcggagatcaaagtgcaagtgtgcgtgtacgccttcgacctcctctatctcaac
ggcgagtccctggtgcgacagccgttgtgtcggcgtcgggctctgctgaaagaaagcttc
tcagaggtggagggagagtttgtgttcgcccgatccatcgactccgacaacaccgacgcc
atcgcagagttcctggagcagtctgttcgagattcctgtgagggcctcatggtgaagact
ctgaagaaggatgccacctatgaaattgccaagcggtctcataactggctcaagctgaag
aaggactaccttgagggggtgggtgacacgatggacctgtgtgtgatcggcggctacatg
gggaaaggcaagaggacgggcacctacgggggcttcctgctggcgtgctacgacgaggag
aacgaggagttccagtccgtctgcaagatcggcaccggtttcaaggatgaagatctggag
caacattacaagttcttaaaggatcacattctgcccaaacctcgtgcctactaccgcttc
gaccaatcagcggagcccgacgtgtggctcgacgccatgcaggtctgggaggtgaagtgc
gccgacctgtcgctgtcgcccatctacaaggccgccatgggactggtggatccagtgaag
ggcatttcactgcggttccctcgcttcctccggatcagagacgacaaaaaaccagaggac
gccacgtctggagctcagatcgctgatttgtacaagaagcagcagcagattcagaatcag
ggggacaaagccgacccagaggactactactga
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