Hippoglossus stenolepis (Pacific halibut): 118119822
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Entry
118119822 CDS
T08308
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118119822 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118119822 (xrcc5)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
118119822 (xrcc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
DUF6005
VWA
DUF4599
Motif
Other DBs
NCBI-GeneID:
118119822
NCBI-ProteinID:
XP_035030042
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Position
13:11001188..11009681
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AA seq
724 aa
AA seq
DB search
MAGSKSALVLCMDVGFSTSNSAPGEAPPFELAKKIVQKFVQRQVFAETKDEVALVLFGTD
STQNPLHQDDQYQHITIYRHLMVAGFELLEEIEKQVIPESQHADWLDALVVCMDLLQTET
DGKKFDRLNIVFLTDLNSPASADNVDAIIENLKKAGITLQFFLPFPVKDHDKEGGGGVDE
DSPGTGKGLSREQKNSLDIMKHIMLNLDEDEGLEEVYTFRNAIEQLSMFKRIERRPMAWP
CQLTIGSSLSIRIVGYKAVTEEKLKKIWFTVDAQTNQKDDVKRETVYCLDDDNETEVQKD
DTIQGFRYGSDIVPFSKVDQDQMKYKHDGKCFAVLGFAKQSMVRHHQFMGNQVLKIFAGR
DDEHAGVALSAVIRALDELKMVAIVRYAYDRRCNPQIGAAFPYIKQDYQCLMYFQMPFAE
DLRQFTFPSLENNKKFTPSDTQLSAVDSLIDSMMLVEEDENGEKKDLFKPHHIPNPAFQR
HFQCLHHRGVSPGTPLPPIEPWLKAALELPEVISERCQVPLEEMKKKFPLTEVEKKKKLK
TSAQIFGKDADELDAKKVKGDEEEEEEYNLADIAEGSVTSVGSVDPARDFCTLIKKKSLP
FGEVCQQLTHRIEQLLSNKNTQYYMKSISCIQAFREQSVKLGNADLYNSYLQSLKRSIPN
RGLEVFWDLLVQDALTLISKDEVEGSTVSKSEANQFLVAEEKKEETAAPPAEDAGDVDDL
LDMM
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcaggatcgaaatcggctctggtgctgtgcatggacgtgggcttctccacgtccaac
tctgccccgggtgaagcgcctccctttgaactggccaaaaaaattgtccagaagtttgtc
cagcgtcaggtttttgctgagactaaggatgaagtggctttagtcctgtttggcacagat
tccacccaaaaccctctgcaccaggacgaccagtaccagcacatcaccatctaccgccac
ctcatggtagccggttttgaactactggaggaaattgagaaacaggtcattccagagagt
cagcatgcggattggcttgatgctcttgttgtctgcatggatctccttcagacagaaact
gatgggaagaagtttgatcgtctcaacatcgtcttcctgactgacctcaactccccagcc
agtgcagacaacgtggatgcaattatagaaaatctgaaaaaagctggcatcactttacag
ttctttctgcctttccctgtgaaggaccatgacaaggagggaggtggaggagtggatgag
gacagcccaggtactggcaaaggtctgtccagggaacagaagaatagccttgacataatg
aaacacatcatgttgaatctggatgaagatgagggcctggaggaagtttatacattcagg
aatgcaatcgagcagctgtctatgttcaagcgtatcgagaggagaccaatggcctggccc
tgtcagctgacaatcggcagctccctgtcgatccgtattgtaggatacaaagcagtgaca
gaagagaagctgaagaagatatggtttacagttgatgctcaaaccaaccagaaagatgac
gtgaagcgagagactgtctactgtctggatgatgacaacgagactgaggtgcaaaaggat
gacaccattcaaggttttcgttatggaagtgacattgttcccttctccaaagtggatcaa
gaccagatgaagtacaagcatgatgggaaatgctttgctgttctaggcttcgccaagcag
agcatggtacgtcatcatcagttcatgggaaatcaggtcctcaagatttttgctggcagg
gatgatgagcatgcgggagtggcgctgtcggccgtcatccgggcgctggatgaactcaaa
atggtggccattgtgcgttatgcctatgaccgtcgctgcaaccctcaaatcggggcagcg
ttcccttatattaagcaggactatcagtgtctgatgtacttccagatgcccttcgcagaa
gacctcagacagtttacattcccttcacttgaaaacaacaaaaagttcacaccgtcagac
actcagctgtcggctgtggactctctcattgactccatgatgttggttgaggaggacgag
aatggagagaaaaaggacctgttcaagccccaccacattcccaaccctgcattccagagg
cacttccagtgcctgcatcaccgaggagtaagccctggtacccctcttcctccaatagag
ccgtggttgaaggctgctctcgagctccctgaggtcatcagcgaacgctgccaagttcca
ctggaggagatgaagaagaagtttcctctcacagaagtggagaagaaaaagaagctgaag
acaagtgctcagatttttggcaaagatgcagacgagctggacgccaagaaagtgaaagga
gacgaagaagaggaggaggagtataatctggcggacattgctgaaggctctgttacttct
gtgggaagtgttgatccagcccgagacttctgcactctgatcaagaagaagagtcttcca
ttcggagaggtctgtcaacaactgactcacaggatagagcagttgcttagcaacaagaac
acacaatactacatgaaaagcatatcctgtatccaggcttttagagagcagtctgttaag
cttggaaatgctgatctgtacaatagctacctccaatccttaaaaaggagcatcccaaac
agagggctcgaggtcttctgggacctgcttgttcaagatgccttaactctgatcagcaag
gacgaggttgaaggaagcactgtgtccaaaagcgaggcgaatcagtttctggttgcagag
gaaaagaaagaggagacggctgcaccaccagctgaagacgcaggagatgttgatgacttg
ctggacatgatgtaa
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