Hippoglossus stenolepis (Pacific halibut): 118122097
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Entry
118122097 CDS
T08308
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118122097 (scaf4a)
03041 Spliceosome [BR:
hsp03041
]
118122097 (scaf4a)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118122097 (scaf4a)
Spliceosome [BR:
hsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
118122097 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118122097
NCBI-ProteinID:
XP_035034448
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All DBs
Position
15:19788204..19797958
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AA seq
1117 aa
AA seq
DB search
MDAVNAFNQELFSLMDSKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFVKKCKPEYKI
AGLYVVDSIVRQSRHQFGSDKDVFGPRFTKNITGTFENLCLCPVEDRSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGSSSAAAHYMGTDEPGSSPPPAKESVTSVTANSTMTSTAQLQNT
DAFAAVAQLFQTSQGQQLQQMLQNIQQQPVKPDTNTHPPLHTSQTQAQNITAGLGVGTPH
PPLPTQQKTPFDKKLLDRFDYDDEPDVGEDSRKDDIASQPSFMQQPPAFPQHMEHFNPSM
INMSQDLSQQVPLPPNGQHQGYGLPSGQSFPVMMPPMGHALPGQPLPGSTGLPGFPGVFP
PHNAAQQQQDLSMDVDRSSVRDGRHGRRSPHSGSRSPKRRRSRSNSRTRRSRHRRSRSRS
RDRRHHSPRPRSLEQREREKERERRQKGLPPPKSETLSICSTTLWVGQLDKRTQQQDVAC
ILEEFGEIESINMIPPRGCAYIVMIHRQDAFRALQKLGRGSYKVNQKAIKIAWALNKGIK
AEFKQYWDVELGVTYIPWSKIREDQLEELKEGGILDGDTLSPEWSGARKSLDQPEELTHN
GRLEPQQPEEMPTLPVPAAAAPPAQVPPMQQPMVGVGSLQPPVFPGPIGMPPPSFPPGVP
PPPFIRPGFNPMQMPPGFPPPGSMPLGPPPPSKGGVEDQNLDPAGLGNRKNDEGPEGPNI
FNNQMGPMGNQVGGPPGVPPGALSGIPPGGHPGNIQPPPGGLLGARPGIIPLQRPPVPQL
PHLQRFPPPHATRPPHPNMPPMPPQMIPRGPHPQMIHHEPPPPKGGFGMPPPHSIRAPFP
PHGHGPPPPQGPPPPPPPFIRPGAPRGQEGPEEIEGRPFRGDRPGFRDREPDRDRDWDRD
RDRERDRGFGGGRRPFGDGGRGGGGERMEGRDRLGGWQEDGGNHRGGGWERDRDRDRDRD
RDRDRDRRDWRERRTSLDKDRERGRSDDGEKDHGRGEGGERGRGEGGSRERARGAEGKEG
DRPRRERRERATRWDRDDRLAELENMDRLQTSDSTEQPCVTPEVAVETSKEPSKEPSAEP
SQEKAESEPAAATEPTPSEPLPPAQSEPTETKQEAAS
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgcctttaaccaggagttattctccctgatggactcaaagcccccg
atctctcgggcgaagatgatatccatcaccaaatcggccatcaaagctatgaaactctac
aaacatgtggtccagattgtggaaaagtttgtcaagaagtgcaagcctgagtacaagata
gcgggcctgtatgtggtggattccattgttcggcagtccagacaccagtttggatcggac
aaggatgtgtttggcccaagatttaccaaaaatatcacaggaacgtttgagaacctctgc
ctttgccctgtagaagacaggagtaagattgtgcgggtgttgaacctgtggcagaagaat
ggggtgttcaagatcgagatcattcagcccctcctggacatggctgctgggtctagcagt
gctgctgcccactatatgggcacagatgagccaggttcttctccacctccagccaaagag
tcggttacttcggtaacggcaaactccaccatgacgtccactgctcagctgcaaaacact
gatgccttcgctgccgtggctcagctcttccagacgtcacagggtcagcagcttcaacag
atgctccagaacattcagcagcagccagtgaagccagacaccaacactcatcctcctctc
catacgagccaaacacaggcccaaaacatcaccgccggcctgggcgtgggcacgccacat
cctcccctgcccacccagcagaaaaccccctttgacaagaaattgctggatcgttttgac
tacgacgatgaaccagatgttggagaggactcaagaaaggatgacattgcatcacagccc
tcttttatgcagcaacctccggccttcccacagcacatggagcactttaatccgtcgatg
attaacatgtcgcaagacctctcacaacaggttcctcttccgcctaatggccagcaccag
ggctatggtttaccatcaggacaaagcttcccagttatgatgcctcctatggggcacgct
ctgccagggcagcccctccctggttcgactgggcttccaggtttcccaggggtatttcct
ccccacaacgcagcccagcagcaacaggatttgtcaatggatgtggaccgctcgtctgtg
agggacggcagacatggccgaaggtcgccacactcaggctccaggtctccaaagcggagg
aggtcacggtctaattctcgcactcgacggtccaggcacaggcgatcccgctcgcgctcc
agagaccgccgtcaccattccccgcgccctcgctcgctggagcaaagggagagagagaaa
gagagggagcgacggcagaagggcctccccccacccaagagcgagacactaagcatttgc
agtacaactctgtgggtgggccagctggacaagagaacacaacagcaagatgtcgcctgt
atactggaggagttcggggagatagaatccatcaatatgattcctccacgtggctgtgcc
tatattgtcatgattcatcgtcaagatgccttcagggctctgcagaagcttggcagagga
tcttacaaagttaaccagaaagccataaagattgcttgggctttgaacaagggcataaag
gctgagttcaaacagtactgggacgtggagctgggtgtcacctacataccttggtctaaa
atcagagaggaccagttggaggagctgaaagaaggaggaatactggatggagacaccttg
tcaccagagtggagtggagcgaggaagtctctggaccaaccagaggaactcacccacaac
ggccgtttagagccacagcagccggaggagatgccaacgttacctgtgcctgcagcagct
gctcctcctgcacaggttcctccaatgcagcagccaatggttggtgtgggttctctccag
cctccggtctttcctggtcctataggcatgccaccgccttccttcccacctggcgtcccc
cctcctcctttcatcagacccggcttcaaccctatgcagatgcctccaggtttccctcct
ccaggatctatgcctctaggtcccccacctccttccaaaggtggagttgaggaccagaac
ctggacccagccggtctgggcaacaggaaaaacgatgagggcccagagggtcccaacatc
ttcaacaaccagatgggacctatgggtaaccaagtaggtggcccaccaggtgtcccacca
ggtgctctttcaggtatacctccaggtggtcatccaggaaacatccagcccccccctggt
ggtctgctcggtgcgcggcctggcataatcccactccagcgtcctcccgttccccaactt
ccacacttgcagcgtttccctccacctcacgcaacaagaccacctcaccccaacatgccc
cctatgcccccacagatgattcccagggggccacaccctcagatgattcaccacgagccc
cctccacccaaagggggctttgggatgccgcctccccacagtattcgggctcctttcccg
cctcatgggcatggcccccctcctcctcaaggtcctcctcctcctcctcctccttttatc
agaccaggggcccctcgtggtcaggaagggccagaggaaatagaggggagaccgttcagg
ggagacaggcctggattcagggacagagagccagatagggacagagactgggatcgggac
agggacagagagagggacagaggttttggaggtggaaggcgtccatttggtgatgggggg
aggggaggaggcggagagagaatggaagggagagacaggctcggaggctggcaggaggac
gggggcaatcaccgtggaggaggatgggagagagatagggacagagatagggacagagac
cgtgatcgtgatagagacagacgggactggagggagaggcggaccagtctagataaggat
agggagcgagggagaagtgatgacggggagaaggatcacgggagaggggaaggaggagaa
aggggaaggggagagggaggcagtcgagaaagagcgagaggagcagaaggaaaagaaggg
gacagaccgaggcgggaacggcgagagagggccacgcggtgggacagggatgatcgattg
gccgaattagaaaacatggacagacttcagacctcggacagcacagagcaaccttgtgtg
actcctgaggttgccgtggaaacgagtaaagaaccgagtaaagaaccgagcgcggaacct
tctcaagaaaaggcagagtcggaacctgccgctgcgacagagccgacgccatctgagcct
ttacctccagctcaaagtgaacccacggaaacaaaacaggaagcagcatcatag
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