Hippoglossus stenolepis (Pacific halibut): 118122916
Help
Entry
118122916 CDS
T08308
Symbol
tnrc6c1
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118122916 (tnrc6c1)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118122916 (tnrc6c1)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118122916 (tnrc6c1)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118122916 (tnrc6c1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA
RRM_1
RRM_occluded
THOC7
Motif
Other DBs
NCBI-GeneID:
118122916
NCBI-ProteinID:
XP_035035754
LinkDB
All DBs
Position
16:complement(7228903..7270700)
Genome browser
AA seq
1884 aa
AA seq
DB search
MEDKKKKKQEEKKKKEAAQKKATEQITKVPDSAKLDPTPPLPPINPSAAPSVAPSSGNGK
RAPSGGQPQTAQQPQTLLQQRYPPREVPPRFRQQEHKQLLKRGQPLPSGSLLLTTTTRPS
TTEPAAAAVPAHSSPSCSSSSTASLPTDLPPQSSQGAQYDNPLWGHLPTNRSATSAASST
NLSGWDQLIIDQKDTEAWPSITLSKSQAPPGGCPLDTDPGRLTSSSSSSSSGSSSTSSSC
STVTMATGANSQTGHFPANHLSSKANSGTSPASHSGTSMLSSQVAANRSWGSGPGPSHCP
PQSSVGNEGKSDSPVGGAGSRGWGSSSSTTNYNLNLNPNANPSAWPMLGHDGAGIGGGSS
GGANTISPPQPTPNLCNQPGPPPAQTSTCTGANTNSNSSGIGSAWGGLMTSDMSEPHPSP
STNVSFSSEPQNLKTDGPNHTNKQEPSSPIHSLPGWGNAPVGMSSMGQPPKGGPQVNGED
SSSVWGNNGDSKAPSSKEAPGWNSGWGHGGGGAGNTGGWGDQSRGDWGKQHTEEPQGSWD
TPSSPPQEPQAPQASPWGRAVSTAGASEGSSESMEGHPPCRDSSRDNPAPLLPAQDLDPR
VLCNTGWGQTPVRQHTSWDMIESKRKNDAATESRGSGPTTPNNAQGPSNTSMGPTQRTDP
GSKNDVPGSQGASGWGGSIAATNKPNSGWGEPPNNIKPPGAPSGWGNSPAGGPTTSVPKN
GGQSWREEKSSGWDDSHIKATSQGWGEQQKASHSWGNSGGSNNTGDWGEPEESKKSPTNP
AWEGEAGGWKEKPRGWGMAASGSGISGAGGNGGWGEPVSQRPSGPPQGWAGKPQDGPSGN
SGGGGVGSWGGSNSVKQAAGLSGSKQESSADPTGWEEPSPPSIRRKMEIDDGTSAWGDPG
AYNKAVNLWDKNNPGNSQAKVPTGGNNPPVPNNNHHHSHNHPYHGPPAPLQNHSQNSQNP
GPTSGPMDPVVQHPPGPSHNRAPLIAQGWGEIPSSHTKSETSWGEPAPAPAPVSMDNGTS
AWNKHTGSCGGWSDGNQDSYGRGNPAMTSASCKPAPKPMQDGWGGGGGGGGGGEELSLSG
GQWDADEGDMWNSAPSQESNSSCNSWGNNPKKVPQKVKVPAKQEDAWIMNRLIKQLTDMG
FPRDPAEEALKSNNMNLDQAMSALLEKKTELDKRGMGMAGHDYNNGLINKPMSCPRPPLL
SKDPSADPRLPFMDKQMQSGMFGGGGAAQARTMQQTQQPPQPPVPPLSSSQPSLRAQVPQ
FLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTLLNQLYQLQLAYQRLQIQQQMLQAQ
RNVSGPIRQQEQQVARTINNMQQQIQQHQRQLAQALLMKHQQQQPPPSHSGLHPGGTKST
LDLFPGHPQAPGLPDLQTKEPQSSPNTYSPYSLSGLNPNMNVNCMDVGSLAMKEPPQPQS
RLSQWTHPNSIESLTGNSSSLEPSLGKHGANLGPPGKPPQLEDSYSPYNLMSSSDSPTSP
LVPPDSWGQGKSNNDKMANGTNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTI
NTNIQDVNRYLLRDRSGGSSPTSSQIEALPPSTDWPVSAYTSSFSLSSPEMDDAGKLSEM
KSTWSSGPISHSQASLSHELWKVPQGPRSSNIAPSRPPPGLTHSKPSSTWGGNSLGLAQG
WSNSYTSAGTTWSTDSSTRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNA
VVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQGQSLGVTTSWQATPGSN
QTRMGGTGSGAPHPIGHSPHWNNNNNGGGGLGSGAKTGGELLWGGVQQYSNLWGPPSGEE
GRIMGSPTPINTLLPGDLLSGESM
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atggaagataagaaaaagaaaaagcaagaagagaagaaaaagaaagaagccgctcagaaa
aaggccacagaacagataaccaaagtgccagactctgccaagctcgatcccacccctcct
cttccccccatcaaccccagtgccgccccgtctgtagccccaagcagtggcaatggcaag
cgcgctccctccggaggtcagccacagacagcacagcagccccagactctgctccagcag
cgctacccacccagagaggtgccccctcgcttccgccagcaggagcacaagcagctgttg
aagaggggtcagcctctgccctctggaagcctgcttctcaccaccacaacacgtcccagc
actactgaacctgcagcagcagctgtacccgcacactcctctccctcctgctcctcttcc
tccacagccagcctgcctacagacctgcccccccagagcagccagggagcccagtatgat
aatcccctctggggacacctgccaactaataggagtgccacaagtgctgcctcttccacc
aatctcagtggttgggatcaactgattattgaccagaaggacacagaggcttggccttct
attaccctcagcaagagccaggcccctcctggaggatgccctttggatactgaccctggt
cgcttgaccagcagcagcagcagcagcagcagcggcagcagcagtactagtagtagttgt
agtacagttactatggccacaggggccaacagccagacaggccacttccctgccaaccac
cttagcagcaaggccaacagtggaaccagtcctgccagtcatagtggaaccagcatgctc
tctagccaggttgcagccaatcgcagctggggttctggacctggaccctcccattgcccc
cctcagtcctcagtggggaatgaaggaaagagtgacagtccagtggggggagcaggcagc
aggggctggggctcatcatcttccaccaccaactataacttgaacctaaaccctaatgcc
aacccatctgcctggcccatgctggggcatgatggagctggcatagggggaggcagctca
gggggagccaacaccatttcacctcctcaacctacaccaaacctctgtaatcagcctggc
cctccaccagcccagaccagcacctgtactggagccaacactaacagcaactcctctggg
attggcagcgcctggggtggtttaatgacctctgacatgtcagagccacacccctcccca
tccacgaatgtgtctttcagttcagaacctcagaaccttaaaactgatggaccaaatcac
actaataagcaggaaccgtcaagccctatccacagcttgcctggctggggtaatgcacct
gtagggatgagttcaatgggccaacctccaaaagggggcccgcaggtcaatggagaagat
agtagctcagtatggggtaacaatggcgactctaaggcaccttcatctaaggaggcacct
ggctggaactctggctggggccatggcggaggtggagcaggaaatactggaggatggggt
gaccagtcccgtggagactgggggaagcagcacactgaagagccccagggaagctgggat
acccccagctctcctccgcaggagccacaggcgccacaggctagtccttggggcagagct
gtgagcacagctggtgccagtgaagggagcagtgaaagcatggagggacatcccccatgc
agagactcatccagagataatccagctcctctgctgcctgcacaggatctggaccccagg
gtgttgtgtaacactggctggggacagacccctgttcgccagcacacctcgtgggatatg
attgagagtaaacgcaagaatgatgcagccactgaatcacggggctctggcccaaccact
ccaaacaatgcccaggggccctccaacactagcatgggccccactcagaggactgaccct
gggagcaaaaatgatgtgcctggttctcagggagcttcaggttggggtggaagcatagca
gctaccaacaagcccaactctggttggggagagccacctaacaacattaagcccccaggt
gcccccagtggctgggggaactctccagcaggaggccccaccaccagtgtacccaagaat
ggtggtcagtcatggagagaggagaagtcaagtgggtgggacgattctcacatcaaggca
acatcccaaggctggggagagcaacaaaaagcatcccacagctggggcaatagtggaggc
agcaataacactggtgactggggagaaccagaagagagcaaaaaaagtcccaccaaccct
gcctgggagggcgaggcaggaggttggaaggaaaagccacgaggctggggaatggcagct
tcaggatcagggatatctggagctggaggaaatggtggctggggagaaccagtttcccag
cgtcccagtggccctcctcaaggttgggctggcaagcctcaggatgggcccagtggtaat
agtggaggagggggcgtaggctcttggggtggctcaaactcagtgaagcaagctgcaggt
ttgagtggcagtaagcaggagtcctcagctgatcctacaggctgggaagagccctcccca
ccttcaatccgacgtaaaatggagatagatgatgggacctcagcttggggtgaccctggt
gcctacaacaaggcagtcaacttgtgggacaagaataatccaggaaattcccaggctaaa
gttcccactggaggcaataatcccccagttccaaacaacaaccatcaccactctcacaat
cacccatatcacgggccacctgcacctttacaaaatcacagtcaaaactctcaaaaccca
gggcccaccagtgggcccatggatcctgttgtgcaacacccgcctgggccatctcacaac
agggctcccctgatagctcaaggctggggagaaataccaagctcccacacaaaatcggag
acctcttggggggaacctgcacctgcacctgctccggtcagcatggacaatgggacgtct
gcctggaacaaacacactgggagctgtggaggctggagtgacggtaaccaggacagctat
ggcaggggcaacccagcaatgacgtctgcatcttgcaaacctgcccccaaacctatgcaa
gacggatggggaggtggaggtggaggtggaggtggaggtgaggagctgagcctgtcaggg
ggtcagtgggatgctgacgagggagacatgtggaatagtgctccctcccaggagagcaac
tcctcctgcaactcttggggcaataatcctaaaaaggtcccacagaaggtgaaggtccca
gcaaagcaggaagatgcctggatcatgaatcgtctcatcaaacagttgacagacatgggc
ttccctagggatccagcagaggaggctctgaagagcaacaacatgaacctggaccaggcc
atgagtgccctgctggagaagaagacggagctggacaagcgggggatggggatggccggc
cacgactacaacaacgggctcatcaacaagcccatgagctgccctcggcccccgcttctt
tccaaagacccctcagcagacccccgcttgcccttcatggataagcagatgcagagtgga
atgtttggcggtggtggagcagcacaagcccggaccatgcagcagacgcagcagcctcct
cagccgccagtgccgcctctcagctcctctcagcctagtctacgtgctcaagtgcctcag
tttctctcccctcaggttcaagcacagctcttacagtttgcagcaaaaaacattggtctg
aatcctgcacttttaacctcaccaataaaccctcaacatatgacccttctgaatcaactt
taccagctgcaactggcataccagcgtttacaaattcagcagcagatgttgcaggcgcag
cgcaatgtttctggtcccattcgacaacaagagcagcaagttgcacgtacaatcaataac
atgcagcagcagatccaacagcaccagcgtcagctggcccaggccctgctgatgaagcat
cagcaacagcagccgcccccctcccactcgggcctgcatcctggtgggaccaaatccacc
ctggatttgtttccaggtcacccccaggctccaggcctccctgacctgcagaccaaagag
ccgcagtcatctcctaacacctacagcccctactctctctctggactgaatccaaacatg
aatgtaaactgcatggatgtgggaagtctggctatgaaggaacccccccagccccaatcg
cgcttgtcacagtggacgcacccaaactccatcgaaagccttactggtaactcctcttct
ctagagcccagcctgggcaagcatggtgccaacttgggtcccccgggtaaacccccacag
ctggaggactcttacagtccctacaacctcatgtccagctcagactctcctaccagcccc
ctggtccccccagacagttggggacagggcaaaagtaacaacgacaagatggccaatggg
accaatatcaactggccgccagagttctgccccggtgttccctggaagggtctgcagaat
atcgaccctgagaatgaccccaacatgacccctggcagtgtccccagtgggcccaccatc
aacaccaatatccaagatgttaaccgctacctgctacgggacaggagtggaggctcctct
cccacttcatctcagatcgaggctctgcctccctccactgattggccagtcagtgcctac
actagctcgttcagtctgtcgtccccggagatggacgatgcaggtaaactgtcagagatg
aaatctacttggtcttctggccctatctctcatagccaggcctccctgtcccacgagctg
tggaaggtccctcaggggccccggagcagcaatatagccccttcacgtcccccacctggc
ctcacccactccaagccttcctcaacgtgggggggaaactccctgggtctggcccaaggc
tggagcaactcttacacctcagcaggtaccacgtggagtacagacagctccaccaggacc
agtagctggctggttttgaggaacctcactccacagattgatggttcgactctgcgtaca
ctgtgcatgcagcacggccccctcatcacattccacctcaacctaacacagggcaacgct
gtggtgcgctacagctccaaggatgaggctgccaaggctcagaagtccctgcacatgtgc
gtgctcgggaacaccaccatcctggcagagtttgctggggaggaggaagtgaaccgcttc
tttgcacagggccagtcgctcggcgtaacaaccagctggcaggccactccaggctccaat
cagacaaggatgggtgggactgggtccggagcccctcatcctatcggtcactcgccccac
tggaacaacaacaacaacggcggcggtggcctgggaagcggagcaaagacaggcggggag
ttgctttggggtggcgtgcaacagtattctaacctgtggggacccccaagtggagaggag
ggacggatcatggggagtcccacaccaatcaatacgctgctgcctggggacctgctgagt
ggagagtccatgtag
DBGET
integrated database retrieval system
