Hippoglossus stenolepis (Pacific halibut): 118123017
Help
Entry
118123017 CDS
T08308
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118123017 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118123017 (ddx42)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118123017 (ddx42)
Spliceosome [BR:
hsp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
118123017 (ddx42)
Complex B
118123017 (ddx42)
Complex C
U2 SnRNP specific factors
118123017 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Mito_fiss_reg
Motif
Other DBs
NCBI-GeneID:
118123017
NCBI-ProteinID:
XP_047199727
LinkDB
All DBs
Position
16:16387796..16396557
Genome browser
AA seq
918 aa
AA seq
DB search
MNWNKGGPGIKRGFGFGGFSLAGKKEEAPAVPDKSQTSFGPPGSSGGYGKNQQLPSFYKI
GTKRANFDEENAYFEDDEEDSSSNVDLPYIPAENSPTRQQMQSGGGGGSDSEDDPLDAFM
AEVENQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTLEEEDEN
IDYDSDGNPIAPTTKKIILPLPPIDHTEIDYPPFEKNFYIEHEELINLTGIQVVELRQKL
NLRVSGAAPPKPSTSFAHFTFDEQLMHQIRKSEFTQPTPIQCQGVPIAVSGRDMIGIAKT
GSGKTAAFIWPMLVHIMDQKELEAGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVA
VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEY
QVRSIASHVRPDRQTLLFSATFRKKIERLARDILTDPIRVVQGDIGEANEDVTQVVEMLH
SGTEKWAWLIRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGYSIGLLHGDMDQSERNK
VISDFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAY
TLLTNKDTTFAGDLVRNLEGANQSVTKELMDLAMQNPWFRKSRFKGGKGKRPNIGGGGLG
YRERPGLGAESSERGSSSLLSSTSSFEGYSKPATGAMGDRMSAMKQAFQAQYKSHFVAAS
SGPPKLSTKSNSSSCWTSAGSLSSVPTESANGSERSHCATLSMSGFTSAGTLSSVPPSLT
SSQHSFPQPQLPPPPPPPPSPPSQRDSSRDRHVEDRGRHGDSHHRHSDRSDRHSSEDRHS
DRDRHGDRDRDRYGERERHSSSRHSDSRNGDGSRRERDDRRSDRDVGDRGSGEGRDRGED
DSFAVPDPPKRRKSRWDN
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccgggtatcaagcgagggtttgggtttggaggattttct
cttgcagggaaaaaagaagaagcccccgccgtccctgacaaatctcaaacatcgtttgga
cccccaggatcaagtgggggatatgggaagaaccagcagctcccgtcattctataaaata
gggaccaaaagagcgaattttgatgaggaaaatgcgtattttgaagatgatgaagaggat
tccagcagcaatgttgatctaccatatatacctgcagagaattcgcccacacggcagcaa
atgcagtctggtggtggcggcggctcagacagtgaggatgacccactggatgccttcatg
gcagaggttgagaatcaagcagcgaaagacatgaggaaactagaggaaaaggaaaaagag
aaaaagtcagccaagggtattcgcgatgacattgaagaagaagatgaacaagaagcctac
ttccgctacatggcagagaatcccacagccggcctgaccctggaggaagaggatgaaaac
attgattatgacagtgacgggaacccaattgcccccaccaccaagaaaatcatcttgccc
cttcctcctattgaccacactgagattgattatccaccatttgagaaaaacttctacatt
gagcacgaggagctaatcaacctgactggaattcaagtggtggaactaaggcagaaacta
aacttgcgagtatctggtgctgcccctccaaaaccctcgaccagctttgcccacttcacc
tttgatgagcagctaatgcaccaaatccgcaagtctgagttcactcagcccacaccaatt
cagtgccagggtgtgcctatagctgtgtctggacgtgacatgattggtattgcaaaaact
ggcagtggtaaaactgcagcttttatttggccaatgctggttcatatcatggaccagaag
gagttggaagcaggagaagggcccatcgcagttatcgtgtgtcccaccagagaactttgt
cagcagatccacgcagaatgtaaacgctttgggaaagcctactcattgcgttctgtggca
gtctatggaggaggaagcatgtgggagcaagccaaggctctgcaggagggggcagagatc
gtggtgtgcactccgggtcgtctgattgaccacgtaaaaaagaaggccacgtccctgcag
agagtgacctacctggtgtttgacgaggctgatcgcatgtttgatatgggctttgaatat
caggttaggtctattgctagccatgtccgccctgacagacagactcttttgttcagtgct
acttttcgaaagaagatcgaaaggctggccagagacatcttgacagatcctatccgtgtg
gtgcagggagacatcggagaggccaatgaggatgtgacccaggtcgtggagatgctgcac
agtgggacagaaaaatgggcctggctgatccggcggctcgtagagtttacctcctctggc
tctgtccttatcttcgttaccaagaaggcaaactgtgaagaactggccactaacctgacg
caggagggctacagcattggcctcctgcatggagatatggaccagagtgagaggaacaag
gtcatcagtgacttcaagaagaagaacttgcccgttctggtggccactgatgtggctgcg
cgtggtctggacattccttccattcgcacagtggtgaactacgatgtggcacgagacatc
gacacacacacgcacaggatcggtcgaacaggtcgtgctggagagaagggtgtagcttac
actctccttaccaacaaagacactacattcgctggagaccttgtgcgaaatctggaggga
gcgaatcaatccgttactaaagaactgatggatttagccatgcagaatccatggtttagg
aaatccagattcaaggggggtaaagggaagaggccgaacattggaggaggtggtcttggt
tacagagagagaccaggcttgggggctgaaagttctgagcgtggcagcagcagcttgttg
tcttccactagcagctttgagggctacagcaaaccagctactggggcgatgggggaccgc
atgtctgcaatgaaacaagccttccaggctcagtataaaagccactttgtggcagcgtcc
agcggccctcctaagctcagcaccaagtctaacagctcgtcatgctggaccagtgctggc
agtctgagctctgtgccgacagagtctgctaatggctcagagaggtcccactgtgccacc
ttgtcaatgtcaggcttcaccagtgcaggcaccctgagctcagtgccccccagtctaacc
agttcacagcacagcttccctcagcctcagcttccgcctccccctcctcctccgccttca
cctccctcacagagagacagctcacgggacagacacgttgaagaccgtgggcgccatggg
gacagtcaccaccgccacagtgacaggagcgaccgacacagcagtgaagatcgccacagc
gaccgagatcggcacggagacagagatcgtgaccgctacggggagcgggagcgccacagc
agcagccgccacagcgacagtcgtaacggagatgggagcaggagggaaagagatgatcgg
aggagcgaccgagacgtgggagacagggggagtggggaggggagggacaggggggaagat
gatagctttgccgttcctgatccaccaaaacgtagaaagagcaggtgggacaactaa
DBGET
integrated database retrieval system
