Halomonas sulfidivorans: HNO53_04325
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Entry
HNO53_04325 CDS
T08036
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hsv
Halomonas sulfidivorans
Pathway
hsv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HNO53_04325 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsv03400
]
HNO53_04325 (ligD)
Enzymes [BR:
hsv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HNO53_04325 (ligD)
DNA repair and recombination proteins [BR:
hsv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HNO53_04325 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QTP58019
LinkDB
All DBs
Position
complement(907226..909784)
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AA seq
852 aa
AA seq
DB search
MERLEEYRRKRDFTRTREPAGEAQGEAATGNLYVMHKHAASHDHFDLRLEQDGVLRSWAL
PKGPSLEPGEKRLAVEVEDHPLEYADFEGVIPEKAYGGGTVMLWDRGTWQLKGKAKPDRI
DIELDGERLKGSWTLTRMSGKRQDKHGRNWLMIKRHDDRARMEDSLTVELDASVASGRSM
REIAEDRDDTWGSADDAGEATLAPPDPSRLDGARKARLPKEVKPQLATLAREVPAQGEWV
HEIKLDGYRLLARLDKGDVRLITRNGKDWTHRFPEIARALESLPVDSALLDGEVVAMGKD
GVSRFGDLQEALSSGRTAALVYQLFDLPYLQSHDLQNVALLERKRTLAALLEVADMASGT
GTIRYSDHLDAQGAAFHERACQMGLEGIISKRADSHYRQKRSRDWLKVKCVSHEEFVIGG
YTDPGGSRSGFGSLLMGAYGKQGLAYAGRVGTGFNNRLLEQLSATLQELEVKRSPFHGSV
PDSRSVHWVRPEIVIEVEFTERTRDGRLRHPAFRGLREDRNPEEIRMTPTKEMAAEGTPE
QDTKPDKPAPSKRKDETSLLGVRLTSPDRVLFPEQGLTKLDLARFYEQIQDWVLPHLVRR
PLSLVRCPQGRNDECFFQKHPRTAIPDSVPRIDVPEKKGSAEYVYVETAADLIGLVQAGA
LEIHPWGSRIDHLEQPDGLVFDLDPDQGIAWKEILRVAGTLRERIESLGLTAFLRTTGGK
GLHLVVPLVPSAEWDQAKAFAKGMAEAHAKDDPKRLTTNMSKAKREGRIFIDYLRNGRGA
TAVASYTVRARENAPVAVPIRWDELNAALRADRYNVQNLRRRLSALREDPWAGFDEAARP
LEADLLKAVGVK
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggaacgactcgaggaataccgccgcaagcgcgacttcacgcgcacccgggaacccgct
ggagaggctcaaggtgaagccgccacgggaaacctctacgtgatgcacaagcatgcggcg
agccacgaccacttcgacctgcgcctggagcaggatggcgtgctcaggagttgggccctg
cccaaggggcccagcctcgaacccggcgagaagcgcctggccgtcgaggtggaagatcac
ccgctcgaatacgccgacttcgaaggggtcattcccgagaaggcctacggcggcggtacc
gtcatgctgtgggaccgcggcacctggcagctcaagggcaaagccaagccggatcgaatc
gatatcgagcttgacggcgagcggctcaagggcagttggaccctgacccgcatgagcggc
aagcgccaggacaagcatgggcgcaactggctgatgatcaagcgccacgacgacagggcg
cgcatggaggattcgctcacggtggaactcgacgcgagcgtcgccagcgggcgcagcatg
cgcgagatcgccgaggatcgtgatgacacctggggctcggccgacgatgcgggtgaggcc
acgcttgccccacccgaccccagccgactcgacggcgcacgcaaggccaggctgccaaaa
gaagtgaagccgcagctcgccactctggcccgcgaggtgccggcccagggcgagtgggtc
cacgagatcaagctcgacggctaccgtctgctcgcccgcctcgacaagggtgacgtgcgc
ctgatcacccgcaacggcaaggactggacccaccgcttccccgagatcgcccgggcgctc
gagtcgctgccggtggactcggcgctgctcgacggcgaagtggtcgccatgggcaaggat
ggagtcagccgcttcggtgacctgcaggaagcactctccagcgggcgtaccgccgcgctg
gtctaccagctcttcgacctgccctatctccagagccacgatctacagaatgtggcgctg
ctggagcgcaagcgcaccctcgcggcgctgctcgaggtggcggacatggcatcgggcacc
ggcaccatccgttactccgaccatctcgacgcacaaggcgcggctttccatgaacgcgcc
tgccagatggggctcgagggcatcatcagcaagcgcgccgacagccactaccggcagaag
cgcagccgcgactggctcaaggtcaagtgcgtcagccacgaggagttcgtgatcggtggc
tacaccgaccccggcggctcgcgcagcggtttcggctcgctgctgatgggcgcctacggc
aagcagggcctggcctatgccgggcgcgtgggcaccggcttcaacaatcggctgctggag
cagctcagcgccaccctgcaggaactcgaagtgaaacgctcgcccttccacggcagcgtg
ccggacagccgctcggtacattgggtgcggccggaaatcgtgatcgaagtggagttcacc
gagcgcacccgcgacggtcgcctgcgccaccctgcctttcgcggcctgcgcgaggaccgc
aaccccgaggagatccgcatgaccccgaccaaggaaatggccgccgaaggcacgccggag
caggataccaagcccgacaagccggctcccagcaagcgcaaggacgagacctcgctgctc
ggcgttcgtctcaccagccccgaccgcgtgctgttccccgagcagggcctgaccaagctc
gacctggcgcgcttctacgagcagattcaggattgggtgctgccccatctggtccgccgg
ccactgtcgttggtgcgctgcccccagggacgcaacgacgaatgcttcttccagaagcac
ccgcgcaccgccattcccgacagcgtgccgcgcatcgacgtgccggagaagaaaggcagc
gccgagtacgtctacgtcgaaacggctgccgaccttatcggcctggtccaggccggtgcg
ctggagatccacccctggggcagccgcatcgaccacctcgagcagcccgacggcctggtg
ttcgacctcgacccggaccaaggtatcgcgtggaaggagatcttgcgtgttgccggcacc
ctgcgcgagcgcatcgaatcgctgggcctcacggcgttcctgcgcaccaccggcggcaag
ggcttgcacctggtggtaccgctcgtgcccagcgccgagtgggatcaggccaaggccttc
gccaaggggatggccgaagcacacgccaaggatgaccccaagcggctgaccaccaacatg
tccaaggccaagcgcgaagggcgtatcttcatcgactatctgcgcaacggtcgcggtgcc
acggcggtagcttcctacacggtacgcgcacgcgagaacgccccggtggcggtaccgatt
cgctgggacgaactcaacgccgcgctgcgtgccgaccgctacaacgtacagaatctgcgt
cgccggctatcggccctccgcgaggacccctgggcgggtttcgacgaggcggcacgcccg
ctggaagccgatctgctcaaggccgtgggcgtgaagtga
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