Halomonas sulfidivorans: HNO53_11000
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Entry
HNO53_11000 CDS
T08036
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hsv
Halomonas sulfidivorans
Brite
KEGG Orthology (KO) [BR:
hsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsv03019
]
HNO53_11000 (hrpB)
Enzymes [BR:
hsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HNO53_11000 (hrpB)
Messenger RNA biogenesis [BR:
hsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HNO53_11000 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QTP59189
LinkDB
All DBs
Position
complement(2358198..2360708)
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AA seq
836 aa
AA seq
DB search
MTPSDELPIDAQLPAIRQALVDHNRALLVAEPGAGKTTRVPLALLNEAWCRGEHGEGRLL
LLEPRRVAARLAAGFMAESLGEPVGQTVGYRMRGESRVGPDTRLEVVTQGVLTRMLQDDP
LLEGVSGIVFDEFHERSLDADLGLALALDAQSVRDDLRLLVMSATLDVEALLEVLGSETP
LIESQGRSFPVQTHYRPLGSRSNSRLSSRDDAAGQQAGAVVEALSMSEGDALVFLPGVAE
IRRLARELARRQPELAIRDLHGRLPLEEQRRALKPEPDDRRRVVLATAIAESSVTVDGVR
IVIDAGQERVPVFQPRSGLSRLETRRVNRASADQRRGRAGRQGPGLCLRLWAEEQPLPAH
GEPEMLQADLAPLAFELARWGIVEPAGLTWITPPPAGALAAGRRLLQRLGLMDEGFLLTE
LGRACVRWPTHPRLAAMLTRAGELDAEPLACALVATLEGRDLVDEQDLERTLQACLAQPA
ARRQWQREAQRLARIGGVQLEVETLAPLGELLALAYPDRVAQRLHHDAGPGRFRLASGGL
ATLPERHPLAHAELLVAADLDGQASGARIFRGVAIERARLEALFPETGEWRASLEWSEEQ
GRLIGEQVRGLGAVVLERRPLASLPPEAVREALLEALRRRGELPFEDSAEQLRGRVALLR
RELGSGRDREDWPDWSLPALMEELETWLGPHLDGIKSLDALARLPLGRYLLDSLDWSLRS
RLDALAPERLEVPSGSRIRLDYMPCLEGRAPVLAVKLQEAFGWRESPRIADGRVAVLLHL
LSPARRPLQVTADLASFWANGYPEVRREMRGRYPKHPWPEDPLTAVATARTKPRAQ
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgacgccaagcgacgaactgcccatcgacgcccagcttccggcgattcgacaggcgctg
gtcgaccataaccgcgcactgcttgtcgcagaacccggggcgggcaagaccactcgggtg
ccgctggcattgctgaacgaggcctggtgccggggcgagcatggtgaaggccgcctgctg
ctgctggaaccgcggcgggtggccgctcgcctcgctgccggcttcatggcggagagcctg
ggcgaaccggtagggcagaccgtgggctaccgcatgcgcggcgagagccgggtagggccc
gacacgcggcttgaggtggtgactcagggggtgctcacgcggatgctacaggacgacccg
ctgctcgaaggggtgagcggtatcgtcttcgacgagtttcacgagcgcagcctggatgcc
gacctggggctggccctggcgctggatgcccagtcggtgcgtgacgacctgcgcctgctg
gtgatgtcggccacccttgatgtggaggcgctgcttgaagtgctgggcagcgagacgccg
ctgatcgagagccaggggcgcagctttccggtgcagactcactatcgtccgctcggctct
cgttcgaattctcgcttgagttcccgcgacgacgcagcaggccagcaggccggggcggta
gtggaagcgctctctatgagcgaaggcgatgccctggtgttcctgcccggcgtggccgag
atccgccgccttgcgcgcgagttggcgagacgccagcccgaactggcgatacgcgatctg
cacgggcggctgccgctggaggagcagcgccgcgcgttgaagcccgaacccgacgatcgc
cggcgcgtggtgctcgctaccgccatcgccgagtccagtgtcaccgtggatggcgtacga
atcgtgatcgatgccggccaggagcgggtgccggtgttccagccgcgcagcgggctcagc
cggcttgagacccgccgcgtcaatcgtgccagcgccgaccagcgccgcggccgggccggg
cgccaggggccgggtctgtgcctgcggctgtgggccgaggagcagccgctacctgcccac
ggcgagcccgaaatgctgcaggccgatcttgctccgctggccttcgagctggcccgctgg
ggcatcgtcgagccggccgggctgacctggatcaccccgccaccggccggggcgctggcc
gcggggcgtcgcctgctgcagcgactcggcctgatggacgagggcttcctgctcaccgag
ctggggagggcctgcgtgcgctggcctacccaccctcgtctggcggcgatgctgacgcgt
gccggcgagctcgacgctgagccgctggcctgtgccctggtggcaacgttggaagggcgc
gatctcgtcgacgagcaggatctggagcgcacgctccaggcctgcctggcgcagcccgcc
gcccgccgtcagtggcagcgggaggctcagcgcctggcccgaattggcggcgtacagctg
gaggtcgagactttggcgccgctgggggagctgctggcgctggcctatccggaccgggtg
gcgcagagactccatcacgacgctgggccgggacgcttccgcctggcgtctggcgggctg
gcgacgctaccggaacgacatccgctggcccatgccgagctgctggtggccgccgatctc
gacggccaggcaagcggtgcgcgaatctttcgcggtgtggccatcgagcgggcgcggctc
gaggcgctgtttccggaaaccggtgagtggcgggcgagcctggagtggtcggaggagcag
gggcgcctgatcggcgagcaggtacgcggcctgggtgcggtggtgctcgaacgccggccg
cttgcgtcgctgccgccggaggcggtgcgagaggcgctgctcgaggccctgcgccgccgc
ggcgagctgcccttcgaagacagcgccgagcagctgcgaggccgggtggcgctgctgcgc
cgggagctgggctctggtcgtgatcgggaggactggcccgactggtcgctgccggcgctg
atggaggagctggaaacctggctaggaccgcatctcgacggtatcaaaagcctcgatgcg
ctggcgcgactgccgttggggcgctacctgctcgacagcctcgactggtcgctacgcagc
cggctcgatgcgttggccccggagcgtctcgaagtgcccagcggttcgcgtatacgcctc
gactacatgccgtgcctggagggccgggcgccggtgctggcggtcaagttgcaggaagcg
ttcggctggcgggaatcgccgcgaatcgccgacggccgtgtggcagtgctgctgcaccta
ctgtcgccggcgcggcgtccgctgcaggtcacggcggatctggccagcttctgggccaat
ggctaccccgaggtgcgccgcgagatgcgcggccgctatcccaagcacccctggcccgag
gacccgttgaccgccgtagccaccgcgcgaaccaagccacgcgcgcaataa
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