Hydractinia symbiolongicarpus: 130612510
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Entry
130612510 CDS
T09218
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03022
Basal transcription factors
hsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130612510
09124 Replication and repair
03420 Nucleotide excision repair
130612510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsy03021
]
130612510
03400 DNA repair and recombination proteins [BR:
hsy03400
]
130612510
Transcription machinery [BR:
hsy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130612510
DNA repair and recombination proteins [BR:
hsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130612510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
ANT
Motif
Other DBs
NCBI-GeneID:
130612510
NCBI-ProteinID:
XP_057289813
LinkDB
All DBs
Position
10:26716606..26718593
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AA seq
457 aa
AA seq
DB search
MTESFSKRKLICKDLYGYLLTLPPSILDGLYDHPFTCLAVFRGLPELAKHYVMRTLFTEQ
SLPDTFVSAWCKTDQMKLHELALSRLKGLKIWTVVNTGSSSIRYEMNRFFRQNLKIGLCG
GDIVEEEPLKTVEEKHARDVDFLDKYSKERWECVLYYMTGSQMGANAGVSEDVARVLINS
GLLKFDVKEQSTSITSAGFQFLLLDTSSQVWYFMSQHLDSKEGSALVECLSFLFQISFSV
LGKDYNVKNLTSDQFSFLQLLREIGLAYQRKRKSKRFYPTRLAINLGTAVTANVSTSQSL
GYLMVETNYRVYAYTDSILQIALISLFTEIKCRFPEFTVGVLSRQSVQQALSCGISANQI
IDFLRTRAHPQMRNHTPVLPPTITDQIKLWEMERDRLRYTEGVLYNQFLSQTDFEMLRKF
AEGKGVLLWANNAKRLMVVSKDGHDDVKKYWKKNKPS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaagtttttcaaagcgaaaattaatttgtaaagatctatatggatatttatta
actcttccaccaagtattttggatggcttatatgaccacccttttacatgtttggctgta
ttcagaggtttaccagaacttgcaaagcattatgttatgagaacattattcacagagcaa
tcacttccagacacctttgtttcagcttggtgtaaaactgatcaaatgaaactgcacgag
ttagctctgtctcgtttaaagggtttaaaaatttggacagttgttaatactggctcttcg
tccattcgatacgaaatgaatcggtttttcagacaaaacttaaagattggtttatgtggc
ggtgatattgtcgaagaagaaccactgaaaacagttgaagagaagcatgctcgcgatgtt
gatttcttagataaatattccaaagaaagatgggagtgtgtgttatactacatgacagga
tcacaaatgggtgcaaatgccggtgtaagtgaagatgttgcacgagttttaattaattct
ggtttattaaaatttgatgtgaaagaacaatcaacttctattacttctgcagggtttcag
ttcttactgcttgatacatcttcacaagtttggtacttcatgtcgcaacatttagactca
aaagaaggttcggcgttagttgaatgcctttcctttttattccaaatcagtttttctgtc
cttgggaaagattataatgttaagaatttaacttcagatcagttcagctttctgcagtta
ttacgagaaattggtcttgcctatcaacgcaagcgaaagtcaaagcgtttctaccctact
agactggcaataaatcttggaacagctgtgactgcgaatgttagcacttctcaaagttta
ggttacttgatggttgagacaaattacagagtttatgcttatacggattcgatattgcaa
atagcattgataagtttatttacagaaataaaatgtcgttttccagaattcacggtagga
gttttaagtcgccaaagtgtgcaacaagcattgtcatgtggtatttcagccaatcaaatc
atagattttttaagaactagagctcacccacagatgcggaatcatacaccagttttaccg
ccaactataactgatcaaataaaactatgggagatggagagagaccgtttacggtatact
gaaggtgttttgtataatcagttcctctcacaaaccgattttgaaatgcttcgaaagttt
gcagaaggaaaaggcgtgcttttgtgggcaaacaatgctaaacgattaatggtggtttcg
aaggatggccacgatgatgtaaaaaagtattggaaaaaaaataaaccatcttga
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