Hydractinia symbiolongicarpus: 130646825
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Entry
130646825 CDS
T09218
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130646825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsy03041
]
130646825
Enzymes [BR:
hsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130646825
Spliceosome [BR:
hsy03041
]
Complex A
U2 snRNP components
U2 related factors
130646825
Complex B
130646825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
130646825
NCBI-ProteinID:
XP_057308530
LinkDB
All DBs
Position
1:complement(22653341..22664687)
Genome browser
AA seq
1312 aa
AA seq
DB search
MGSENKGRKRDHSESPKLKKKQKRRYRNDRSKKWKQDSADSSSEEEMLSSDEYSSSGEKR
KSRDTKRHKRRKETKHRQADNSSASSSSRSPVVEKRKKNKKKNKRSSSSSDSEHERKIKK
DRKKHRRSESSSPEKKSRRSKSRSPSRRRKRSQSRSPSRRRKRSKERKRSRSPVKKKNAR
ERSESPVKSRRKRKSHSSSPIRSKKTEKSEAVKDKADIGRSETPVKERRRRKSRSTSPAQ
NEKNEKSETPDDEKGTKNIVETEKLNEDAFRQETIKKIKEREKEEMEKEKQKLLAEEKKQ
KEIEEKKKLKELEEKLKKKQMEEKEKRRAKELQKEKERAKEKELAKEKSREEERERIKEK
ERDKLKRDEDRRRKESKRKEEKNETKKNLKREEAKSEKPALVKKEVLNPEEEMRKRKERI
EAWRNARKKDSAKSESEKTDEEKDEAQKKWSLEDDDEDDDDAADAAASTTASENKTEESV
TVNGKPMKKAEPAEEKNMSESEDEDLDPLDAFMKGIDKEINKNASGKSSKPSSVGRSKTK
TITVVKTVVKKSVQAVAKPEVIEQNQDALEYSSEEDAPEDVKASDFLDVTKKKKELTIAD
HSKIYYASFRRNFYVEVPDIARMSDDEVKLYRDSLGDIQVRGKHVPKPIKTWAQCGLSTK
VMNVLKRCGYEKPTPIQAQAVPAIMSGRDMIGIAKTGSGKTLAFLLPMLRHVIDQPELDE
DDGPIAIIMTPTRELALQIYRESKKFCKPMNLTVACIYGGSGISEQISELKRGAEVIVCT
PGRMIDMLAANNGKVTNCRRCTYLVLDEADRMFDMGFEPQVMRIIGNIRPDRQTVLFSAT
FPRQMEAVARKVLTKPVEIQVGGRSVVCSDVEQRALVLEADNKFFKLLELLGVYQEKGSV
LAFVEKQDTADSLFKDLLKNGYPCLSLHGGMDQFDRDSTIADFKNGVTRLMVSTSVAARG
LDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGNKGTAFTFLTPEQGRNAGDVIKAFELSK
CETPVDVQALWNEFKEEMAKEGKSVKLNSGFTGKGFKFNDEEAARVNESKKMRKFALGLQ
DSDDEAEAAENAMEKIDADLEKAFSNKPKVAIAPEVVEMQKVRAAEQNVDKGKLQQASNI
AALINKKLTSGQVIDRNAAATAHILSGGALESLKGVGLAKQLADKVNAKLNYKPIEQEVQ
EVEKPAAVRYEDEIDINDFPQQARWRITSKEIIEQVRELSEAGVTVRGLYIPPNKKPDEA
EGEKRLHLYIESLSERSIQIAKAEIKRLLKEELIRAESHTYRPAQTGRYKVV
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgggatctgaaaataaaggtagaaaaagagaccatagtgaaagtccaaaattaaaaaag
aaacaaaagcgaagatatagaaatgatcgatccaaaaagtggaaacaagactcagcggat
tcttcaagcgaagaagaaatgttaagctctgatgaatattcctctagtggtgaaaaaaga
aaatcacgtgacacaaaaaggcataagagaagaaaagaaactaagcataggcaagcagac
aattcatctgctagcagttcttctcgcagtcctgtcgttgaaaagcgcaaaaagaacaag
aaaaaaaacaaacggagttcttcatcttcagatagtgaacacgagcgcaaaataaaaaag
gacagaaaaaaacacaggcgaagcgagtctagtagtccggaaaaaaaatctcgccgttca
aaaagtagaagtccgtcacggcgacgcaaacgcagtcagagtagaagccctagccgtcga
cgaaaacggagtaaagaacgcaagcgaagccggagtcctgtcaaaaagaaaaatgcccga
gaaagaagcgagagtccagtgaaaagcagaagaaagcgtaaaagtcatagttcttctccc
attcgtagtaagaaaacagagaaaagcgaagctgtgaaagataaagctgatataggaagg
agcgagactccagtgaaagagagaaggcgtcgtaaaagtaggagcacgtcccctgcccaa
aatgagaagaatgagaaaagtgaaacgcctgacgatgaaaagggtactaaaaatattgtc
gagaccgaaaaactaaatgaagacgcttttaggcaggaaactattaaaaaaataaaagaa
agagaaaaagaagaaatggagaaagagaagcaaaaactgcttgcggaggagaaaaagcaa
aaggaaatcgaagaaaaaaagaaactaaaagagttggaggagaaattaaaaaagaagcag
atggaagagaaggagaaacgaagggcaaaagaactacaaaaagaaaaagagagagctaag
gagaaagaactagcaaaagaaaaatcgcgagaggaagagagagagaggataaaggaaaag
gaaagagataaattgaaacgagacgaggatagaagacgaaaagagtcaaaacggaaagag
gaaaaaaacgaaaccaagaagaacttaaaaagggaggaggcgaagagtgagaagcctgcg
cttgtaaaaaaagaagtattgaatcctgaggaggagatgaggaaacgaaaggaacgcatt
gaagcgtggagaaatgcccgaaagaaagactccgcgaaatccgaatcggaaaaaacggac
gaagaaaaggatgaagctcaaaagaaatggagtttagaagacgatgatgaagatgacgac
gatgctgctgatgctgctgcgtcaaccaccgcaagcgaaaataaaacagaagagagcgtt
actgttaatggtaaaccaatgaagaaagctgaacctgcggaggagaaaaatatgagcgag
tctgaagacgaagatttagatccacttgatgcgtttatgaaaggtatcgataaagaaatc
aataagaacgcttcaggaaaaagcagcaaaccttcatcagtcggccgcagtaaaaccaag
actattactgtagtaaaaacggtcgtaaagaagtctgttcaagctgtagcgaaacctgaa
gttattgaacaaaaccaggacgcactggaatattcctctgaagaggacgctccagaagac
gtgaaagcgagcgattttttagacgtaacaaagaaaaaaaaggaacttacgattgccgac
cacagcaagatatactacgcgtcatttcgacggaacttctatgtagaggtgccggacatt
gctcgtatgtcggatgatgaagttaaactatatagagactcattaggagacattcaggtc
cgcggcaaacacgtacctaagcctatcaaaacgtgggcacagtgtggtctaagcacgaag
gtgatgaacgttctaaagcggtgcggatacgagaaaccgacgcccattcaagctcaagct
gtgccagcgattatgtcaggtcgtgatatgattggcatcgctaaaacaggttctggcaaa
acactggcgtttcttttgccgatgctccgacatgtgatcgaccagccggagctagatgaa
gacgacggacctatagccatcattatgacgccgacaagagaattagcgttgcaaatttac
cgcgaaagtaaaaaattttgcaaaccgatgaatttgactgtggcgtgtatatatggtgga
agtgggattagtgaacagatatcagaattgaaaagaggggcggaagtgatcgtttgcacg
ccgggtcgtatgatcgatatgttggcagctaacaacgggaaagtgacgaactgtcgacga
tgtacgtatttagtactggatgaagctgatcgtatgttcgatatgggtttcgaacctcag
gtaatgcgaattattggtaacattcgccctgacagacagacggtgttattctccgctacc
tttcctcgtcaaatggaagcagtggcgcgtaaggtgttgacaaagcctgtggaaatacaa
gtcggtggtcgcagtgtcgtgtgttcggacgtggagcagcgtgcgttagttcttgaagct
gacaacaaattttttaaactactcgaactgttgggtgtttatcaggaaaaggggagtgtc
ctcgcattcgtcgaaaaacaagatactgcggattctttatttaaagacttactaaaaaac
ggttacccgtgcttgtctttacacgggggcatggaccagtttgaccgagatagtaccata
gctgattttaaaaacggtgtgacaaggcttatggtttcaacgtccgtagccgcacggggt
ttggatgtaaagaatcttattttagtggttaattacgattgtccaaatcactacgaggat
tacgtacatcgtgtcgggcggactgggcgggctggcaataaaggtacagcttttacattc
ttaacgcctgaacaggggcgcaatgcaggcgatgtcataaaagcgttcgaactttcaaaa
tgtgaaacgcccgtcgacgtgcaagctctgtggaacgagttcaaagaagagatggcaaag
gaaggaaagtctgtgaaattaaacagcggtttcactggcaagggctttaagtttaacgac
gaagaagcagcccgtgtcaacgaatcgaaaaaaatgcgaaaattcgccttgggtttgcaa
gattcagatgatgaagcagaagcagctgaaaacgcgatggagaaaatcgatgcggacctc
gagaaagcgttttctaacaagccgaaagtggcgattgctcctgaagttgttgaaatgcag
aaggtgagagcggccgaacagaacgtcgataagggaaagctccaacaggcttccaacatc
gccgccctgataaacaagaaattaacatctggccaagtcatcgacagaaatgccgcagct
accgctcatattctctccggtggagcgttggaatcattgaagggggtcgggttggccaag
caattggcggacaaagtcaacgcgaagttgaattataaacctattgaacaggaggtacaa
gaagttgaaaagcctgctgccgtacggtacgaagacgaaatcgatattaacgattttccg
caacaagcgcgatggaggattacatcgaaagaaattattgaacaagtgcgagaactatct
gaagcaggcgtgaccgttcgtggtctttatattccacccaacaaaaaacctgatgaagct
gaaggtgaaaagaggctacacttgtacatcgagtcgttatccgagagaagcattcagatc
gccaaggcggaaattaaacggttgttgaaggaagagttgattagagcagaatcgcacacg
tatcgacctgcacagacaggacggtataaagtggtttaa
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