Hibiscus syriacus (Rose-of-Sharon): 120115335
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Entry
120115335 CDS
T09559
Name
(RefSeq) uncharacterized protein LOC120115335 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120115335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsyr03000
]
120115335
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120115335
04121 Ubiquitin system [BR:
hsyr04121
]
120115335
Enzymes [BR:
hsyr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120115335
Transcription factors [BR:
hsyr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120115335
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120115335
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120115335
Ubiquitin system [BR:
hsyr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120115335
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-RING_2
zf-UDP
FYVE
Rtf2
Motif
Other DBs
NCBI-GeneID:
120115335
NCBI-ProteinID:
XP_038991995
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MSDEGEKTCPLCAEEMDITDQQLKPCKCGYEICVWCWHNIMNMAEKDSTEGRCPACRSTY
DKDRIVGMTTNCERLVAEVNMERKTKLQKAKTKSSEARKHLSSVRVIQRNLVYIVGLPLN
LADEELLQRRDYFGQYGEVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQSVH
GFNLDGRSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEIGPQEDSFSKDEIISAYTSRVH
QVTGATNYMQRRSGNMLPPPVDDYFPNSSASAAKPIASAPNNATVTVPKSSPNGSSGRSI
ALPAGASWGMRASNQPQLASLACSNGPVKQNSDTVSSALQFSSAVTNTNQAGSLHADVVK
KPFEEIHAMHIKGKPDLLKPSKQNSGLDCQTTALDKPSSSNGVTASKSLIGQLSPKPSSN
HDHQGTNMPSTITNSFDHGGQTSVSSGEKVGSISSADGNTQRLCSDMSTLTLDRNVLNGH
SEEVRPSSSASEYGSSSSPSSQGLQQCYTDYYREPLSSATAGRSVTSPDGVCISKEQPLW
EINSHTRAVECINSEVEEDILSFDNQRLKDPEVISRSSYMPNSPIPLHLSDHTRSHSLQH
GDAFGPVNLNSDTRAVDNKAHGSSCFHGANVSSWSNGYLDKYISSSIGSDITKERHPLLS
NEEKGKQLGRFLINAESNATNDTGESNIISNILSLDFDTWDESLTSPQNLVKLLGDSEKQ
QPNTLKLSSSWKTLNNNQSRFSFARQEDSKNFPADVESSSGGFGQMPQNRPSQGFADSRD
SYLCKFGVSDGLASCNFEESDNFSSSPSIFSNKLSASRAQISAPPGFSVRSRAPTPGFSS
IERVNHGFDPTSGNHLMDTSSPLRFSYQAPQSGCINGPGDIEFIDPAILAVGKGRIQGGL
NNPGLDIRSNFAQQLGTNENEARFQLLMQSSLSPHQNLRYDVGDSFSSLNDSYAISSRLM
DQSQVNNMSPFAQLSLQQSRNTHNMSSGHWDGWNEVQGGNGLGVAELLRNERLGFNKFYS
GYEDSKYRMPTLGDLYSRTFGM
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgagggagaaaagacctgtcccctttgtgcggaagagatggatattactgat
cagcaactgaagccttgcaaatgtggttatgagatatgtgtttggtgttggcataacata
atgaatatggctgagaaggatagtacagaggggaggtgtccagcatgtcgtagcacttat
gataaagacaggatagtagggatgactactaattgtgagaggttggttgctgaagttaat
atggaaagaaaaacaaagttgcagaaagcaaaaactaaatcatctgaagcaaggaagcac
ctgagtagtgtgcgagttattcaaaggaatcttgtttacattgtggggttgccacttaat
ctggcagatgaggagcttctccaacgtagagattattttggtcaatacggtgaagttctt
aaagtatctatgtctcggactgcagctggtgtcattcagcaatttccaaacaatacatgt
agtgtatatattacgtactcaaaagaagaggaagcgattcgttgtatccagtctgtacat
ggatttaacttggacggtagatcattaaaggcatgctttggtacaactaagtattgtcat
gcatggttgagaaatgtgccttgcaccaatcctgattgtctatatttgcatgagattggt
cctcaagaggatagtttctcaaaagatgaaattatatcagcctacacaagtagggttcat
caagtaactggtgcaacaaactatatgcaacggcgttctggaaatatgttacctccacca
gtggatgattatttccccaatagttctgcttctgcagcaaaaccaattgcaagtgctcca
aataacgcaacagtgactgttcctaaaagttctccaaatggaagctctggtagatctatt
gctctccctgctggagcatcatgggggatgcgtgcttcaaaccaaccacaactggctagt
ttagcatgttcaaatggacctgttaaacagaattccgatacagtcagcagtgcattacaa
ttttcatctgctgtaacaaacaccaatcaagctggctcattacatgctgatgttgtaaaa
aagccatttgaggagattcatgctatgcatataaagggtaaacctgatttgttaaaacct
tcaaagcagaattctggtttagattgtcaaactactgcactagacaaaccttcttcatcc
aatggagtaactgcttctaaatcattgattggtcagttatctcctaaaccatcatccaat
catgatcaccagggcactaatatgccatcaactattacaaactcctttgatcatggtggc
cagacttctgtttcctctggtgagaaagtggggagtatttcctctgctgatgggaacaca
cagaggttgtgctctgatatgtcaacattgaccttagataggaatgtcttgaatggacat
tctgaggaagttagaccaagcagttcagcttctgaatatggatctagcagttcacctagc
agtcaggggttacaacaatgttatactgattactatcgagaaccattaagttcagcaact
gctgggagatctgtgacctctcccgatggggtttgcatttcaaaagagcagcctctctgg
gaaatcaattcacatactcgagctgtggaatgtataaattctgaagttgaggaagatata
ctatcatttgataatcagagactcaaggatccagaagtgattagtcgttcaagttatatg
ccaaattcaccaatcccactccatttgtcagatcatactaggtctcattctttgcagcat
ggtgatgcttttggtcctgttaatttgaattctgacactcgcgctgtagataataaagct
catggcagttcatgttttcatggagctaatgtttcttcttggtccaatggataccttgac
aagtacataagcagtagtattggttctgatattaccaaagaacgccatcctctgctttca
aatgaagagaaagggaagcagttgggaagattccttattaatgctgagagcaatgctact
aatgatacaggggagagcaatataatttcgaacatattgtcacttgattttgatacatgg
gatgagtctctaacttctccacagaacttggtgaaattgttgggagacagtgagaagcag
cagcccaatactctcaaactatctagttcatggaaaacactgaataataatcagtcccgt
ttctcatttgcgagacaggaggattctaaaaattttccagctgatgttgaatcctcctct
ggtggttttgggcaaatgccacagaaccgacccagccaaggttttgcagacagcagggat
tcatatctatgcaagtttggagtttctgatggtttagcttcctgtaactttgaggaatct
gacaatttttccagcagtccatcaattttctccaataaactttctgcttcaagggctcaa
atttcagccccaccaggattctctgttcgtagcagggcaccgactccaggcttttcttca
attgagagagtaaaccatggttttgatcccacatctggaaatcatttgatggacacttca
tccccattaagattttcttatcaggctcctcaaagtggttgtattaatggcccgggggat
atagaatttatagatccagcaattttggcagttggtaagggtagaattcagggagggctc
aacaatccaggtttagacatcagatctaattttgctcaacagttgggtaccaatgaaaac
gaggccagattccaactactgatgcagagttctctttctcctcatcagaacctaagatac
gatgttggggatagcttttcttctctgaatgattcttatgcaatttcttcgaggctcatg
gatcaatcacaagtaaacaatatgtccccattcgcacagttgagtctccaacagtcgaga
aacacacataacatgtcaagtggtcattgggatggatggaatgaggtacagggtggaaac
ggtcttggtgtggcggagctcctaagaaatgaaagactgggatttaacaagttctattcc
gggtatgaagattcaaagtacaggatgcccactttaggtgatctgtacagcagaacattt
gggatgtga
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