Hibiscus syriacus (Rose-of-Sharon): 120116099
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Entry
120116099 CDS
T09559
Name
(RefSeq) uncharacterized PE-PGRS family protein PE_PGRS54-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
hsyr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120116099
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120116099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120116099
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
120116099
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
120116099
NCBI-ProteinID:
XP_038992611
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MGKGKMDEGKGGDQFHRNEAISAVADESFLGEEDDDYEDLYSDVNVGEGFLQSLRRSDNV
GFLNEENKNSSNINSGGKFNGSAIGALESGVSIPGVAGGGDRGDSSVSYESQGFRSVSAV
DDVKGPSLDVVGGGLRVEFAQASSKLNEVAVEQSGNKNNGLGSVGGMGHQGYGVGNVRGV
ENEGLVRQGVVGGAGVNGSGGSGGGPTIGNGGGNVGVAGAGPGVGANGGAAGGGRTILFV
GDLHWWTTDTELESELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPAVATACKEGMNGH
VFNGRPCVVAFASPFTVKKMGEAQLNRNQQMAQSALSQAKMGPNDVAGKTGANNIQTGGN
YQGGDNNRGYGRGNWGRGNAQGMGGRGPGGPMRNRGGGMGGRGIMGNGGNGFGQGMGGTA
PLMHPQSMMGQGFDPAFGVPMGRMGGYGGFPGAPAPPFSGILPSFPPVGGVGLPGVAPHV
NPAFFGRGMPMNGMGMMPSSCVDGPNMGMWSDPSMGGWGGDEHGGGRARESSYGEEAASD
HQYGEVSHDKGGWQNPAKEKDRTSEREWSGSSKRRNRDDKESGYDRDVHREKEMGHGHDW
PERRRRDDRDIGRERDRERSRDRDLDRDREERERDRYREDRDRYADHRRYRDCEPEHDDD
WDRGRSSRTHSKSRLSQEDEHRSRSRDADYGKRRLTSG
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggggaagggaaagatggatgaagggaaaggaggggatcagttccacaggaatgaagca
atctcggcagttgctgacgagagttttttaggtgaggaagacgacgattatgaagacctt
tacagtgatgttaatgttggtgaagggtttcttcaatctttgagaagaagcgacaatgta
gggtttctaaatgaagaaaataagaatagttcaaatattaacagtggtgggaaatttaat
ggatcagcaataggtgctctggaatctggtgtttcaattccgggggttgcaggtggtggt
gatagaggggattctagtgtttcttatgagagtcaaggttttaggagtgttagtgctgtt
gatgatgtcaaaggacctagtctggatgttgttgggggtgggcttagggttgaatttgct
caggcctcaagtaagctgaatgaggtagctgtggagcagagtgggaataagaataatggt
ttaggcagtgtaggtggtatgggacatcaaggatatggtgtagggaatgtgaggggtgtt
gagaatgaaggcttggtgagacaaggagtagtaggaggcgctggtgtgaatggctctggt
ggcagtggcggtggccctacaattgggaatggaggtggaaatgtgggtgttgctggtgct
ggccctggagttggggcaaatggtggtgcagctggaggtggcaggacaatattgtttgtt
ggagatttgcattggtggacaacagatactgaattggagtccgagttgtgcaagtatggg
cctgttaaggaagtaaagtttttcgacgagaaagcaagtgggaagtcaaaagggtattgt
caggttgagttttatgatccagccgttgccacagcttgtaaggagggaatgaatgggcac
gtgtttaacggaaggccttgtgttgttgcctttgcatctccctttactgttaagaaaatg
ggagaggctcagttaaataggaatcagcagatggcacagtctgctctctcgcaagcaaag
atgggtcctaatgatgtggctggtaagactggtgccaataatattcaaactggtgggaat
tatcaaggtggggataataatagaggttatgggagagggaattggggaagaggcaatgca
caggggatgggaggtagagggccaggtggtcctatgaggaacaggggtggtggaatgggt
ggtagaggtatcatgggaaatggtggaaatggattcgggcagggaatgggtgggacagct
cctctcatgcacccgcagtcgatgatgggtcaaggttttgatcctgcttttggtgtcccc
atgggaagaatgggcggttatggaggctttcctggtgctccagcgcctccattttcaggg
attttaccttcattccctcctgttggaggagttggtttgcctggagtggctcctcatgtt
aaccctgcattttttggaagaggtatgcccatgaatggtatggggatgatgccttcaagt
tgtgtagatggacctaatatgggaatgtggtcggatcctagcatgggaggatggggtggt
gatgagcatggtggtggaagagctagagagtcaagctatggggaggaagctgcatctgac
catcaatatggcgaggttagtcatgacaaaggaggttggcaaaacccagctaaagagaaa
gatagaacttcagaaagagagtggtctggttcatccaaaagaaggaaccgcgatgataaa
gaatcaggatatgatagggacgtacatagggagaaggaaatgggccatggtcatgattgg
cctgaaagaaggcgccgggatgatagagacattggccgagaacgtgatagggagcgctct
cgagatcgtgacctcgatcgtgatcgggaggagagggagagggatagatatagggaagac
agagacagatatgcagatcatcgtaggtacagggactgtgagccagagcatgatgatgat
tgggaccgggggcggtcatcaaggactcacagcaagtcccgattatcgcaggaagatgag
catcgttcaagatctagagatgctgattatgggaagaggcggcttacctcagggtga
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