Hibiscus syriacus (Rose-of-Sharon): 120125479
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Entry
120125479 CDS
T09559
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120125479
03015 mRNA surveillance pathway
120125479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120125479
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120125479
mRNA cycle factors
P-body specific factors
120125479
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
120125479
NCBI-ProteinID:
XP_038999845
LinkDB
All DBs
Position
Unknown
AA seq
479 aa
AA seq
DB search
MKEPLRRTKVVIRHLPPSLTQSSFFSQIDDRFSDRYNWFSFRLGKCTHKHQRYSRAYINF
KRPEDVFDFSEFFGGHVFVNEKGTQFKAVVEYAPSQHVPKPGTKKDAREGTIFKDPDYLE
FLKMIAKPVENLPSAELQLERKEAELSGTPKGTPVITPLMEFVRRRRAAESGAQGSITVR
KTGKKAAAASRGKPGSSSKRGSEKKKYILKDGAKGAKKSNSLVASEKEDQSVTSAANEIR
ENGTVCGIDGPVTGIKFSADSGKKKILLLKPKDRKAPRASEGEPELQGASSPVATSSGST
ALRQCQRCEDGGMLIRNILLSNESSQNRSSAAVQPQQKNETMRPPRAMNARLGSGSEKRE
KRTRNKDRPDRGVWAPLLRSEVPQDSEEHLTPSVSQYAQPTRNPQVIQGEMKGDIPNGSS
GHNIPSENGSCRHFAQHPTTYNTKDDGSVTLRDGKSSKSGSTSSFHEKQVWVQKSTSGS
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagccgttaagaagaacgaaagtggtgataaggcatctgccaccttcacttacc
caatcctctttcttctctcaaatcgacgatcgtttctctgatcgttacaattggttctcc
ttccgtctcggcaagtgcacccataagcatcagcgatactctcgagcctatataaacttc
aagaggccagaagatgtcttcgatttttctgagttcttcggtgggcatgtatttgtcaat
gagaagggtactcaatttaaagccgttgttgaatatgctccttcacagcatgttccaaag
ccaggcactaaaaaggatgctcgtgaagggaccattttcaaagaccctgattatctggag
ttcctcaaaatgattgctaaacctgttgaaaatcttcccagtgctgaacttcagttggaa
agaaaagaagcagaactatctggcactcccaaaggaacccctgtcattactccactaatg
gaatttgtacgtcgaagacgagctgctgagagtggagctcagggttcaatcactgtaaga
aagactggaaaaaaagctgctgctgcatctagaggcaagcctggatcaagtagcaaacgt
ggctctgagaagaaaaagtatattctaaaagatggtgcaaaaggtgcaaagaagtccaat
tctttggtagcatctgagaaagaggatcaatcggtgacttctgctgcaaatgaaattaga
gagaatggaactgtctgtggcattgatggtcctgtaactggaatcaaattttctgctgat
tctgggaagaaaaagattcttctcctaaaaccaaaagatcgaaaggctcctcgggcgtcg
gagggtgaacctgaactgcagggtgcatcatctcctgtagcaacttcatctggttcaact
gctctgagacaatgtcagcgatgtgaggatggtggaatgttgataaggaacatacttttg
agtaatgaatcgagccaaaatcgatcttctgcagcggtccagcctcagcagaaaaatgaa
actatgagacctccccgggccatgaatgcacgattgggttctggaagcgagaagcgtgaa
aaacgtacaagaaataaggatagacctgatcgtggtgtatgggcccctcttcttcgttct
gaagttccacaagatagcgaggagcacctgacaccctctgtgtcacaatatgcccagccc
actcgtaatcctcaagttatccaaggagaaatgaaaggcgacatacctaatggaagcagt
ggacataacattccgtcagaaaatggttcctgtagacattttgctcagcatcccacaacc
tataatactaaggatgatgggtctgttacattgagggacggcaagtcttccaaaagtgga
tctactagctcattccatgagaaacaagtttgggttcagaagtcaacttcaggatcttag
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