Hibiscus syriacus (Rose-of-Sharon): 120151289
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Entry
120151289 CDS
T09559
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120151289
03015 mRNA surveillance pathway
120151289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120151289
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120151289
mRNA cycle factors
P-body specific factors
120151289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
120151289
NCBI-ProteinID:
XP_039019729
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MKEPMHKTKVVIRHLPPSVTQSFFFSQIDERFSDRYNWFSFRLGKSSHKQQSYSRAYINF
KRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPKPGTKKDGREGTIFKDPDYLE
FLKLIAKPVENLPSAEIQLERKEAELSGAPKETPVVTPLMEFVRQKRAAKSGTQGSITTR
KIGRKMAGKPGSSSKSSEKKKYILKDSAKGAKKSNFFVASKQEDQSVTSVAKEIRENGTV
CGIDGPVTGITFAADSVKKKILLLKPKDREPPNVPEGVSEQQCASSPAANTPGSTTSRQG
QRRKAGGKIIRSILLRNEAGQNQSSAAGQLQQKTQAMSPDSVKKPPQPTNPRLGYGSEKH
EKRTRNKDRPDRGVWAPLNRSDFSQSSEERLTPPVSSRSSMDGSNWQFGRGAATHNIKMM
DLSYQVRASLQKEEVLQALEPMRNKCGFRNHPQVLKKSNMNRGLESQPFRPKFGVVIFCH
VEMKCACNTSICLVGFAIVVFSRKCS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaccgatgcataaaacgaaagtggtgataaggcatcttccgccgtcagttacc
caatcgtttttcttttctcaaatcgacgaacgtttctctgatcgttacaattggttctcc
ttccgtctcggcaagtccagccataagcaacagagctattctcgagcttacataaacttc
aagagaccggaagatgtctttgagtttgctgagttctttgacggacatgtatttgttaat
gagaagggtactcaattcaaggccattgttgaatatgctccttcacagcgtgtaccgaag
cctggcactaaaaaggatggtcgtgaagggaccattttcaaagatcctgattatctggaa
tttctcaaattgattgcaaaacctgttgagaatcttcctagtgctgagattcagttggag
agaaaagaagctgaactatctggtgctcccaaggaaactcctgttgttacaccactaatg
gaatttgtgcgtcagaagcgcgctgccaagagtgggactcaggggtcaataacgacaaga
aagattggcagaaaaatggctggcaagcctgggtcaagtagcaagagctctgagaagaaa
aagtatattctaaaagacagtgcaaaaggtgcgaaaaagtccaatttttttgtagcatcc
aagcaagaggatcaatcagtgacttctgttgcaaaagaaataagagagaatggaactgtc
tgtggcatcgatgggcctgtaactggaattacttttgctgccgactctgtcaagaaaaag
atccttctccttaaaccaaaagaccgagagcctcctaatgtgccagagggtgtatctgaa
cagcagtgtgcatcatctcctgcagccaatacacctggctcaactacttcaagacagggt
caaagacgcaaggctggtgggaagataataaggagcatacttttgagaaacgaggcaggc
caaaatcaatcttcagcagcaggccagcttcagcagaaaactcaagccatgagtccggac
tctgtcaaaaaacctccccagccaactaatccgcgattgggttatggaagcgagaagcat
gaaaaacgtacaagaaataaagatagacctgatcgtggtgtatgggcacctcttaatcgt
tctgatttttcacaatctagtgaagaacgtctgacaccccctgtgtcttctcgcagttcc
atggacggttccaattggcaatttggtcggggcgcagctacccataatataaagatgatg
gatctgtcatatcaagtgagggcaagccttcaaaaagaggaggtgctacaagctctggag
cccatgagaaacaagtgtgggttcagaaatcatccacaggttcttaaaaaatctaacatg
aaccggggtcttgaatcacaaccctttcgacccaaattcggggtggtcattttctgccat
gttgagatgaagtgtgcatgcaacacatctatttgccttgttgggtttgcaatagttgta
ttctccagaaaatgttcttga
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