Hibiscus syriacus (Rose-of-Sharon): 120165384
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Entry
120165384 CDS
T09559
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120165384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120165384
Enzymes [BR:
hsyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120165384
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120165384
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
120165384
NCBI-ProteinID:
XP_039030848
LinkDB
All DBs
Position
Unknown
AA seq
1195 aa
AA seq
DB search
MTEEVKLTVLASLFTWIQRIRPSARKRSKFRKFLDTFCKPSDYFSAMRLILPSLDRERGT
YGLKESVLALCLIDALGMARDSPDALRLINWRKGGANTGANAGNFALVASEVLQRRQGTA
SGGLTIKELNDLLDRLASAENRAEKTAILSTLINKTNAQEMKWVIMIILKDLKLGISEKS
IFQEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKAVRPQLAMRVRDPVAAWK
KLHGKEVVVECKFDGDRIQIHKNGIEIRYYSRNFLDHYEYGHGMSNVIAQNILVDRCILD
GEMLVWDSTSNRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDVLYVGDTSVIHQSLKERH
ELLKKVVKPLKGRLEILVPNGGLNSHCPPGEPCWSSLAHSVNDVERFFKETIENRDEGIV
IKDLSSKWEPSDRSGKWLKLKPDYIRAGSDLDVLVIGGYYGSGRRGGEVAQFLVGLADRQ
DPNAYPRRFLSFCRVGTGLTDDELETVAKKLKPYFRKYEYPKKMQPSFYQVTNHSKERPD
VWIESPEKSIILSITSDIRTIQSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELVH
SSNGTTQKETERENQHDSKTKHKERPRKAEKTKVSIVPSHFIRTDTSRVKGESLVFSNHM
FYFVNVPPTHSLDSLHKMIVELGGKFSMNLNNSVTHCVAAESKGIKYKAAKRHGEIIHYS
WVLDCCSQKKLIPLQPKYFLFLSESSRMKLQQEVDEYSDPYYWDLDLADLKQLLNNIQRS
ENSKTIDYYRGKYCPNDKWSLFHSCSVYFYCSPQFLKDDWQVLLKLAMRRLKHEVLMGGG
KISENLNHATHVVVLSIPGLDVDIDSIIKSSSFEEKNLLWKKGLHVLGSRWLENCLEHRK
KLQEDQYSLKPFDFEETNFLERKSDRDPSKTMPEVTSASHECKKEESAAKDHLEKSISLV
TPDYGKRKRRPASKNTNKGKAVVSRAPRVPRRRGKMSVKINEDGSEESDSDDKTNEGIEK
DEENTEHNGTAGGEDFEFHQNQVAEENAGIKWPDKVSDTVMSETKDDRASIKWPDKASDT
VMYETNNDQGSKSDDKFDYVEPDEGNMRHETSKSEKVVLMSDPVQAMLLDMIPSLGIKQV
ETTNSVVENEKPRADNDAKVSVVEDEKGDADIIAPTPKKKKVSYKDVAGELLKDW
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggaagttaagttgaccgtgttagcgagcctgttcacatggatccagaggatc
cggccatcagcgaggaagcgttccaagtttcgaaaattcctcgacaccttttgcaagcct
tccgattatttcagcgccatgaggctcattcttccctctctcgaccgtgagcgtggcact
tacggtctcaaggagtctgtgctcgccctctgccttatcgacgctctcggcatggccagg
gactctcccgacgctctgcgtcttatcaattggcgcaagggtggcgccaacaccggcgcc
aatgccggaaacttcgctcttgttgcttctgaggttctgcagcgtaggcaaggcacggct
tccgggggacttaccatcaaggaattgaatgacttgcttgatcgattagcttctgctgaa
aacagggccgagaagactgcgattctttctactttgattaataagacaaatgcacaggaa
atgaagtgggttatcatgattatactaaaagatctcaagttgggaattagtgagaagagc
atatttcaagaatttcatccagatgccgaagacttgttcaatgtcacctgtgacctaaaa
ttggtttgtgaaaagttaagggaccgtagccaacgtcataagcgtcaggacattgaagtt
ggaaaagctgtacgcccacaactagctatgagagttcgtgatccagttgctgcatggaaa
aagcttcatggtaaggaagttgttgttgagtgtaaatttgatggtgatcgcatccaaatc
cacaaaaatggaatagaaatacgttactactccaggaattttcttgatcattatgaatat
ggccacgggatgtctaatgttattgcacaaaatattttggttgataggtgtatacttgat
ggagaaatgttagtttgggattcgacttcaaatcggtttgctgagttcgggtcaaatcag
gaaatagccaaggcagcaaaagatggccttgatagtgacagacagttatgctatgttgca
tttgatgttctttatgttggagatactagtgttattcaccaaagcttgaaggaacggcat
gaacttcttaaaaaagttgtgaagcctttgaagggtcgtttagagattttagtgcctaat
ggtggtctcaactcacattgtcctcctggggaaccttgttggtcatctcttgctcatagt
gtgaatgatgttgagagatttttcaaggaaacaattgaaaatagggatgaaggaattgta
ataaaagaccttagttccaagtgggaaccaagtgatagaagtgggaagtggttgaagttg
aagcctgattacattcgtgctggttctgacttggatgttctagttattggaggctattat
ggctcaggacgtcgaggtggagaggtagctcaattcttagtaggcctagctgatcgtcag
gaccccaatgcttatcctagacgatttttatctttctgcagagttggtactgggctgact
gatgatgaattggaaactgttgcaaagaaattgaagccttattttaggaaatatgaatac
ccaaagaagatgcaaccaagtttttatcaagttacaaaccattcgaaagagagacctgat
gtttggattgaaagcccagagaaatcaatcattctttccatcaccagtgatatcaggact
atacagtctgaggtatttgctgcaccatacagcctgagatttccacgtattgatagagtg
agatatgacaagccttggcatgagtgccttgacgtgcagtcatttgtagaactggtgcat
tcaagtaatggtaccactcagaaagagacggaacgggaaaaccagcatgatagtaaaaca
aagcacaaggaacgcccaaggaaggcagagaaaacgaaggtctccattgtcccttctcat
tttattcggaccgacacatcccgcgtgaagggagaatccttagtattttcgaatcatatg
ttttactttgttaatgtgcctccaacacattctcttgattcacttcacaaaatgattgtg
gagcttgggggaaagttctcaatgaatttgaataattcagttacccattgtgttgcagct
gaaagcaaagggatcaagtataaggcagcaaagcggcatggggaaattattcattactct
tgggtcttggattgttgctctcagaagaaactcatacctttgcagccaaagtacttcctt
tttctttccgaatcatcaaggatgaaattacagcaagaagttgatgaatactctgatcct
tactattgggaccttgatcttgcagatctcaaacagctcttaaacaatatccaaaggtct
gagaactccaagacaattgactattacagggggaagtactgtccaaatgataaatggtct
ctgtttcatagctgctctgtttacttctactgttcacctcagtttttgaaagatgattgg
caagtcttgttgaaactagcaatgaggagattaaagcatgaagttttaatgggcggtggc
aaaataagtgagaatctcaaccacgctacccatgttgtagtcctctctataccaggactg
gatgtggacattgattctattattaagagtagttcttttgaagagaaaaatcttctctgg
aaaaaggggctccatgttttgggatctcggtggttggaaaattgcttagagcatcgaaag
aagttgcaagaagaccaatatagcttgaaaccctttgattttgaagaaacaaacttcctt
gaacgcaaatcggaccgagatccgagcaagaccatgccagaggttacatctgcttctcat
gaatgtaaaaaagaagagagcgcagccaaagatcacttggaaaaatcaatttcattggtt
acgcctgattatgggaaaaggaagagaagacctgctagcaagaacacaaacaaagggaaa
gccgttgtaagccgagctccgagagtaccaagacgtcgtggaaagatgtctgttaagatt
aatgaagacgggtctgaggaaagtgattctgatgacaaaacaaacgaggggatagagaag
gatgaagagaacaccgaacacaatggaacggccggtggggaagatttcgagtttcatcaa
aatcaagtagcagaagaaaacgcaggcataaagtggcctgataaagtttctgatactgtg
atgtctgaaacaaaggacgatcgagcaagcataaaatggcctgataaagcttctgatact
gtgatgtatgaaacaaataatgaccaaggcagcaagagtgatgacaagttcgactacgtt
gaaccggatgaagggaatatgcgccatgagacttcaaagtcggaaaaggtagtacttatg
tctgatccagttcaggccatgttactggacatgatcccaagccttggaataaagcaagtt
gaaactacgaattccgttgtcgagaacgagaaaccacgtgcagataatgatgctaaggtt
tccgttgtggaggatgagaagggagatgccgacattatcgcaccgacaccaaagaagaag
aaagtgagttacaaggatgttgccggagaattactcaaggattggtaa
DBGET
integrated database retrieval system
