Hibiscus syriacus (Rose-of-Sharon): 120172724
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Entry
120172724 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120172724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120172724
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120172724
Spliceosome [BR:
hsyr03041
]
Complex A
U2 snRNP components
U2 related factors
120172724
Complex B
120172724
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
120172724
NCBI-ProteinID:
XP_039036051
LinkDB
All DBs
Position
Unknown
AA seq
1166 aa
AA seq
DB search
MEDSEKKRYRERRDRDRDKERRRSEREKSGDSDREKERDREKHRERRRSERDKSSDSDRE
KERDKEKQRERRLSEREKSSDSDREKEREKEKNRERRRSEREKSSDSDREKEKEKEKHRE
RGRERKDREREKEKERERAREKEREREREREKREREREKQRERERERERKLREREKRREH
DSDDSKEDKERHRKRRRREQDDDDEANYKERESKSNRGESPVRKKSSKEESEKKGKKSRE
EEMEDEQSKLDEEMEKRRRRVQEWQELRRKKEEAEREKRGEGNAVEEEEPKVGKAWTLEG
ESDDDEAGSPMKPETDMDVDDNENSKPDGKEIGDAMIEDGNSEDGKDKMVVDQNGGNEVA
VDEDEIDPLDAFMNSMVLPEVEKLSTAVTDSPPSGNNGNLKNEKKDGLSNGGLLQPKKGS
NKALGRIIPGEDSDSDYGDIENVEDNLEDEDDDEFMKRVKKTKAEKLSIVDHTKIDYKPF
RKNFYIEVKEISRMTPEEVTACRKELELKIHGKDVPKPIKTWHQTGLASKILETIRKLNY
EKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMA
PTRELVQQIHSDIKKFTKALGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT
SGGKISNLRRVTYFVLDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR
KVLNKPVEIQVGGRSVVNKDITQLVEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKC
DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI
NFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQVVPDDLKAL
ADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDE
GVRKAGGDISQQTALAQIAAMAAASKASTGLMQNPLSSAQLLPNATLPISLPGVLGVSIS
GTAAVGPGSGLPGLPNEEAARKAALQAAFNLQHNLAKIQADVMPEHYEAELEINEFPQNA
RWKVTHKETLGPISEWTGAAITTRGQYFPPGRIPGPGERKLYLFIEGPSEVSVKRAKAEL
KRVLEDISHQSLQLPGGTQPGRYQVL
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggaagattcagaaaaaaagaggtaccgtgagaggagagatagggatagggataaggaa
cggcgtcgttccgagagggagaagagcggcgattccgatagagaaaaggaaagggacaga
gaaaagcatcgtgaacggcgtcgttccgagagggataagagcagtgattccgatagagaa
aaggaaagggacaaggaaaagcaacgagaacggcgtctttctgagagggagaagagcagt
gattccgatagagaaaaagagagggaaaaagaaaagaatcgagaacggcgccgctctgag
agagagaagagcagtgattccgatagagagaaggagaaggagaaagaaaaacaccgtgaa
agagggagggaaaggaaagacagggaacgggagaaagagaaggagagggaaagagctagg
gagaaggaaagggaaagggaaagagaaagggagaagagagaaagggaaagggagaaacaa
agggagagggaaagagaaagagaaaggaagttaagggaaagggagaagcgaagggagcat
gacagtgatgatagtaaggaagataaagaacgacataggaagcgtcgaaggagggagcag
gatgatgacgatgaggctaattataaggagagggagagcaaatcaaacagaggagaaagc
ccagttaggaaaaagagcagcaaagaagagtcggagaagaaggggaagaaaagtagggag
gaggagatggaagacgaacaaagtaaattggatgaggagatggagaaaaggaggaggagg
gttcaagaatggcaagagttgaggaggaagaaggaagaggcagagagggaaaaacgtggg
gaagggaatgctgtggaggaggaggagcctaaggttggtaaggcttggactctcgaaggg
gaatcggatgacgatgaagccggatcaccgatgaaaccggagacagatatggatgtggat
gataacgaaaattctaagccagatggtaaggaaattggagatgctatgattgaagatggg
aattctgaggatggaaaagataaaatggttgttgaccaaaatgggggtaatgaggttgct
gtggatgaagacgaaatcgatccattagatgcttttatgaattcaatggtgttacctgaa
gttgagaagctaagtacagcagttactgattctcctcctagtggtaataatgggaatttg
aagaatgaaaaaaaggatggcttgagtaatggtggactgctgcagccaaagaaaggctcg
aacaaggcacttgggagaatcattcctggggaagattcggattcagattacggggatatt
gagaatgtcgaagataatttagaagatgaagatgatgatgagtttatgaaaagggtaaag
aagacaaaagctgagaaactatcaattgttgaccacacaaagattgattataagcctttc
aggaaaaatttctacattgaagttaaggagatctctagaatgacacctgaggaagtgact
gcttgcaggaaggaattggaactgaagatacatggaaaggatgtgccgaaaccaatcaaa
acctggcatcaaactggactcgcaagtaaaatattagaaacaataaggaagcttaattat
gagaagccaatgccaattcaagctcaggcgttgcccataattatgagtggtcgagactgc
attggcgtagcaaaaaccggctctggtaaaacccttgcttttgtgctacctatgttaagg
catattaaagatcagccacctgtagtagctggagatggacctattggactcattatggca
cctacaagggagcttgtccagcaaattcacagtgacataaagaagtttaccaaggcattg
ggaatcagatgtgttcctgtatatggaggctctggtgttgcccagcagattagtgaatta
aagcggggaacagagattgttgtatgtactccaggtaggatgattgatatactttgtacc
agcgggggaaaaattagcaatctgcgtagagtgacatactttgttctggatgaagctgac
agaatgtttgatatgggttttgaacctcaaattactcgaattgttcaaaatattcgacct
gatcgccaaactgtgctattttctgccactttccctcggcaggttgagattttggctcgt
aaagtgttgaataaacctgttgaaatacaggtaggtgggagaagtgttgtgaacaaggac
ataacacagttggtcgagatgaggccagaaagtgaaaggttcctaagattgttagaactt
cttggtgaatggtatgagaaggggaaaattctgatttttgtccacacccaagaaaagtgt
gatgctttgttcagggatttgctcaaacatggttatccttgcctgtcacttcatggggcc
aaggatcagactgatcgggaatccaccatttctgattttaagagcaacgtctgcaatttg
ttgattgcaacaagtgttgcagctaggggtttagatgtaaaggagctcgaattagtgatt
aattttgatgttccaaatcattatgaagattatgttcaccgtgttggtaggactggtaga
gctgggcggaaaggctgtgctatcacatttatctctgaggatgatgcaagatatgcacca
gatcttgtaaaagctttagaactctctgagcaagttgttcctgatgacctgaaagctctt
gctgatggctttatggctaaagtaaatcagggacttgagcaggcccatggaacaggttat
ggtggaagtggttttaaattcaatgaagaggaagatgaaaagagaaaagcagcaaagaaa
gctcaagcaaaagaatacgggtttgaggaagacaagtcagattcagaagacgaagatgag
ggggtgcggaaggcaggtggtgacatatcacaacagacagcacttgctcagatagctgcc
atggctgctgcctccaaagctagtactgggttgatgcagaatcctctatcttctgctcaa
ctgcttcccaatgctacattgcctatttctcttcctggtgtacttggtgtgtcaatatcc
ggcactgcagcagttggtcctggtagtggattgcctggtcttccaaatgaagaggccgct
cgaaaagctgcactgcaagctgctttcaatttacagcataacttagcgaagattcaagct
gatgttatgcctgaacattatgaagccgagttggagattaatgaatttccccaaaatgct
cgatggaaggttacccacaaggaaacattgggcccaatatcggaatggactggagctgcc
attacaacaaggggccagtatttcccacctggtcggatcccaggaccaggagaacgaaag
ctttacttgttcattgagggaccttccgaggtatctgttaagagagctaaggcagaactg
aaacgtgtcctggaagacatctcacaccagtccttacaacttcctggcgggactcaacct
ggcagataccaagttctgtag
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