Hibiscus syriacus (Rose-of-Sharon): 120175842
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Entry
120175842 CDS
T09559
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120175842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120175842
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120175842
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120175842
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
120175842
NCBI-ProteinID:
XP_039038325
LinkDB
All DBs
Position
Unknown
AA seq
271 aa
AA seq
DB search
MSLLPKSDSIQIREVWNDNLEEEFALIREIVDDYPYIAMDTEFPGIVLRPVGNFKSSYDY
HYQTLKDNVDMLKLIQLGLTFSDEEGNLPTCGTDKYCVWQFNFCEFNVEEDIFANDSIEL
LRQSGIDFKKNNDKGIDSMSFGELLISSGIVLNDSVHWVTFHSGYDFGYLLKLLTCQNIP
DTQAGFFNLIHIYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS
CTFRKLKENFFSGTLEKYSGVLYGLGVDNAH
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgttgccgaagagcgattcgatccaaattcgtgaggtatggaatgataacctt
gaggaagagttcgctttgattcgggaaatagtcgatgattacccgtacattgccatggac
accgagtttccgggcattgttttacgtcccgtgggcaatttcaagagcagctatgattat
cactatcaaactttgaaagacaatgttgatatgttaaagttgattcagttgggccttacc
ttttcagacgaggaagggaacttgcctacttgtggaactgataaatattgcgtttggcag
ttcaatttttgcgagtttaacgttgaggaggatatctttgctaatgattctattgagctt
ttgaggcaaagtgggattgatttcaagaagaacaatgataagggtattgattcgatgagt
ttcggtgagcttttaatatcttcagggattgttttgaatgatagtgtgcattgggttact
ttccacagtggttatgatttcggttacttgcttaagctcttgacttgccagaacatacct
gatacgcaagccgggttctttaatttgatccatatttactttcccacgctctatgatatc
aagcatttgatgaagttttgtaacagtctgcacggtggattgaacaagcttgcagagttg
ttggaagtggaaagagtcgggatttgtcatcaagcgggttcggatagtttgctcacatct
tgtacattcaggaaactcaaggagaacttctttagtggtactctggaaaagtactctggt
gttttatatggtttaggtgttgacaatgctcattga
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