Hibiscus syriacus (Rose-of-Sharon): 120196097
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Entry
120196097 CDS
T09559
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120196097
03015 mRNA surveillance pathway
120196097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120196097
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120196097
mRNA cycle factors
P-body specific factors
120196097
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Geminin
Motif
Other DBs
NCBI-GeneID:
120196097
NCBI-ProteinID:
XP_039053908
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
MKEPLRKTKVVIRHLPPSVTQSFFFSQIDERFCDRYNWSSFRLGKSSHKQQTYSRAYINF
KRPEDVFEFAEFFDGHVFVNEKGTQFKAIVEYAPSQRVPNPSNKKDGREGTIFKDPDYLE
FLKLIAKPVENLPSAEIQLERKEAELSGAPKETPVVTPLMEFVRQKRAAKSGTQGSITTR
KVGRKITAASAGKSGSSSKSSDKKKYILKDSAKGAKKSNFFVASKQEDQSVTSVAKEIRE
NGTVRGIDRSVSGITFSADSGKKKILLVKPKDREAPNVPEGVSEQQGALSPGANTPGPTA
SGQGQRRKVGGKLIRSIFLRNEAGQSQSSEAVQPQQKTQAMSPDTVKKLPQPTNTRMGSG
SEKHEKRTRNRDGPDRGVWVPRADFSQSNEERLTPFVLQSAQSSRSSMEGSSRQFGRGPA
AHTIKDDGSVISNEVKPSKRGAPTSSGAHEKQVWVQKSSSCS
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagccgctgcgtaaaacgaaagtggtgataaggcatctgccgccgtcagttacc
caatcgtttttcttttctcaaatcgacgaacgtttctgtgatcgctacaattggtcctcc
ttccgtctcggcaagtccagccataaacaacagacttactcacgagcctacataaacttc
aagagacctgaagatgtctttgagtttgctgaattctttgacgggcatgtatttgttaat
gagaagggtactcaatttaaggccattgttgaatatgctccttcacagcgtgtaccaaat
cctagcaataaaaaggatggtcgtgaagggactattttcaaagatcctgattatctggaa
tttctcaagttgattgcaaaacctgttgagaatcttcctagtgctgagattcagttggag
agaaaagaagctgaactatctggtgctccaaaggaaactcctgttgtaacaccactaatg
gaatttgtgcgtcagaagcgagctgccaaaagtggaactcaggggtcaataactacaaga
aaggttggcagaaaaattactgctgcgtctgcaggcaagtccggatcaagtagcaagagc
tctgacaagaaaaagtatattctaaaagacagtgcaaaaggtgcaaaaaagtccaatttt
tttgtagcatccaagcaagaggatcaatccgtgacttctgtcgcaaaagaaataagagag
aatggaactgtccgcggcattgatcgttctgtaagtggaattactttttctgccgactct
ggcaagaaaaaaatccttctcgtgaaaccaaaagaccgagaggctcctaatgtgccagag
ggtgtgtctgaacagcagggtgcattatctcctggagcaaatacacctggtccaactgct
tcaggacagggtcaaagacgcaaggttggtggaaagttaataaggagcatatttttgaga
aatgaagcaggccaaagtcaatcttcagaagcagttcagcctcagcagaaaactcaagct
atgagtccagacacagtcaaaaaacttccccagccaactaatacacgaatgggttctgga
agtgagaagcatgaaaaacgtacaagaaatagagatggacctgatcgtggtgtatgggtc
cctcgtgctgatttttcacaatcaaatgaggaacgtctgacaccgtttgtgttacaatca
gcacagtcttctcgcagttccatggaaggttccagtcggcaatttggtcggggcccagca
gcccatactattaaagatgatggatctgtcatatcaaatgaggtcaagccttccaaaaga
ggagctcctacaagctccggagcccatgagaaacaagtttgggttcagaaatcatcctcc
tgttcttag
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