Hibiscus syriacus (Rose-of-Sharon): 120210869
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Entry
120210869 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120210869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120210869
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120210869
Spliceosome [BR:
hsyr03041
]
Complex C
Other components
Step II factors
120210869
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
ABC_tran
nSTAND3
AAA_19
AAA_30
SLFN-g3_helicase
T2SSE
AAA_16
TsaE
ATPase_2
Helicase_RecD
AAA_29
G-alpha
DAP3
Flavi_DEAD
PhoH
RsgA_GTPase
ResIII
AAA_7
VapE-like_dom
AAA_24
NB-ARC
Motif
Other DBs
NCBI-GeneID:
120210869
NCBI-ProteinID:
XP_039065457
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
MANLPIVQFGKKILETVEQNQVVVLIGETGSGKSTHLSQMLYRKGYTDSGIVAVTQPRRV
AAVSVSRRVVQELDVRLGEEVGYAIRFEDRTSERTKIKYLTDEVLLRESLSNPELNQYSV
IILDEAHERSLNTDILLGLMKSLVKRRTSKFKVLITSATLDGEKVSKFFSDCPLLTVPGK
LFPVEIFYSKERPRSYLESSLKTALDIHVREPEGDILIFMTGQDDIEKLVSKLEDKVQSL
EEGSCMDALILPLHGSLPPEMQVRVFTPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPATEMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSSVYNDEFLDATVPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSTESLEDALKQLYLIDAIDENGSITSIG
RTMAELPLEPSLSRTLIEANEFGCLSQALTVVAMLSVETNLLPGRSKNNENKRKHPPLEL
PDGSGFGDHIQLLQIYECWDENDYDIGWCKDYELQVRGMMFVKEVRKQLCQIMQKIAKGS
FEVRSNQSRKRDXSYRNLRKALSIGYANQLAERMRNHNGFXTLGFKPQLVQVHPSSVLKP
DDDGLYPNYVVYHELIATSRPYMRNVCTVERQWVMPISEKLEKLDVRKLSGGGLGHVEEV
TEGNTSELPKKGADVIAPEERESKIQAARERFLARKGKK
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcttccaatcgtgcagttcgggaagaagattttagaaacagtggagcagaat
caagtggtggtgttgataggagagaccggttcgggaaagagcactcacctctctcagatg
ctctaccgcaaagggtataccgattccggtatcgtggccgtcactcagccacgtcgtgtg
gctgccgtctctgtttccagacgagttgtgcaggagcttgatgttaggcttggggaagaa
gtaggctatgctattcggtttgaagatagaacttccgaaagaacaaaaatcaaatacctt
actgatgaagtgcttcttcgagaaagcctgtcaaatccagaactaaatcagtattctgtt
attattttggacgaggctcatgaaaggagtctgaacacggatattctgctggggttgatg
aaaagcttagttaaaagacgcacctccaagtttaaagtgctgataacatcagcaacactt
gatggtgaaaaagtctcgaagttcttttcagattgtcccttgttgactgtccctggaaaa
ttatttcctgtggaaatattctacagcaaggagcgtcctagaagctatctcgagtcttcc
ctaaaaacagctctggatatacatgttcgggaaccagagggtgacatcctaatattcatg
actggacaagatgatatagagaagttggtatcaaagctggaggataaagttcaaagtcta
gaggaaggctcctgcatggatgcattaatccttcctcttcatggttcattgccacctgaa
atgcaggtgcgtgtattcactccaccccctccaaactgtaggcgttttattgttgccaca
aacatagcggaaacttctttgacagtcgacggtgttgtgtatgttattgattctggttac
gtgaagcaacggcaatacaacccagcaactgaaatgtattcccttgatgttgttcaaatt
agcaaggtacaagctaatcaacgtgctggacgagctggaagaacacgtcctgggaagtgc
taccgtttatacccatccagtgtttacaatgatgaattcctggatgcaactgttcctgaa
atacagcgatcttctctcgctggcagtgttctttatctaaagtcattggatctccctgat
attgatattctgaagtttgattttcttgatcccccttctactgagtcattagaagacgct
ttaaagcaactgtatctgattgatgccattgacgaaaatggatcgataacaagtataggg
cgaacaatggctgagctcccattggaaccttcactttcgagaactttaattgaggcaaat
gaatttggttgcttatcccaggctctgactgttgtagccatgttatcagttgaaacaaat
ttgcttcccggtcgaagcaagaataacgagaataaaaggaagcaccctccattggaactt
cctgatggttctggttttggtgatcacatccaactgttacagatctatgaatgctgggat
gaaaatgattacgatattggttggtgcaaggattatgaattacaggtgcgaggaatgatg
tttgtcaaagaagttcgaaagcagctgtgtcagataatgcagaagatagcaaagggatca
tttgaagtgcgatcaaatcaaagccggaaaagagacnatagttataggaatttgaggaag
gcattgtccattggctatgctaatcagcttgctgagaggatgaggaatcataatggcttc
ngaacactgggttttaagccgcaactagtgcaggtgcatccttcctctgtgctaaagcca
gatgacgacggattatatccaaattatgttgtctaccacgaacttattgctacctcacgg
ccatatatgaggaatgtgtgtaccgtagagcgtcaatgggtgatgcccatttcagagaaa
cttgaaaaactcgatgtaagaaaattaagtggtggaggattgggtcatgtagaagaggta
accgagggaaacacgtcagaattgccaaagaagggagctgacgttatagctccggaagag
cgggaaagtaaaatccaggcagcaagggaacgttttcttgctcgcaagggaaagaaatga
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