Herbaspirillum seropedicae Z67: ACP92_11350
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Entry
ACP92_11350 CDS
T04519
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hsz
Herbaspirillum seropedicae Z67
Pathway
hsz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACP92_11350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsz03400
]
ACP92_11350
Enzymes [BR:
hsz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACP92_11350
DNA repair and recombination proteins [BR:
hsz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACP92_11350
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKN65782
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Position
2563469..2566039
Genome browser
AA seq
856 aa
AA seq
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MSTGKLDRYRAKRDFTITPEPSGHASRSRAGAQSQSLQFFIQRHHARRLHYDFRLELDGV
LKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPHGD
ARAGLAKGHLSFELEGEKLHGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAITEL
RPESVKDLGDQAPLAKARASAKAAPDSTGPMPAQMQAQLATLVDRAPAGEQWLCELKFDG
YRGLCRIDHGQAAIYTREGLDWSHRWPILVQALARLPVDEAWIDGEVVALDAQGQISFEA
LQNLARGDRQQADGIRLALYAFDLLYLNGHDLRDIPLRQRKALLRELIPGSDPEGLLLYS
EHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYTEPAG
QRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPTGQQR
RGVHWLRPALVAEVRFAQWTSAGILRHGSFVALREDKDPHQIRREGPQPLAEAKADAKAP
AAAPARSRGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPELRQ
RPLSLVRCPDGHAGKRFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVATVQMG
VLELHAWGATGAALNHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLKTSGG
KGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLRNAPG
ATTVVAYSVRARDGAPVSVPITWEELEQGKGIKADHFRVSTMPARIRSLEQHDPWAHFGQ
APQRLTKAMLAAFDSV
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccggcaagctcgaccgctaccgcgccaagcgcgatttcaccatcacgcccgaa
ccctccggtcatgccagccggagccgggcaggggcgcagtcgcagagcctgcaattcttc
atccagcgccaccatgcgcgccggctgcattatgactttcggctcgagctcgacggtgtg
ctcaagagctgggccgttcccaagggccccagcctggacccacacgacaagcgactggcc
gtgcgggtcgaggaccatcccttcgactacggcagcttcgagggcgacatccccgcgcac
cagtatggcgccggccatgtggtcttgtgggatcgcggtcagtggcgaccgcacggcgat
gcgcgcgccgggctggcaaaaggtcatctgagctttgagctggagggcgaaaaactgcac
ggccgctgggcactggtgcgcatgggcaagcccgccgccgacggcaaggaaaactggctg
ctgatcaaggacgacgacgccgctgcggccagcggcgagcaagcggccatcaccgaactg
cgccccgagagcgtcaaggatctgggcgaccaggcgccgctcgccaaggccagagcaagc
gccaaagccgcgccggacagcaccggtccaatgcccgcgcagatgcaggcgcaactggcc
actctggtcgatcgcgctcccgcaggcgagcaatggctgtgcgagctgaagttcgatggg
tatcgcggcctgtgccgcatcgatcacggccaagccgccatctacacccgggaaggcctg
gactggagccatcgctggcccatcctggtgcaggcgctggcgcgcttgccggtcgatgaa
gcctggatcgatggcgaggtcgtggcgctggacgcgcaaggacagatcagcttcgaagcc
ttgcagaacctggcgcgcggggatcgccagcaggccgatggcatccgcctggcgctgtat
gccttcgatctgctgtacctgaacggccacgacctgcgcgacattcccctgcgtcagcgc
aaggcgttgctgcgtgaactgatccccggttcggacccagagggactgctgctctacagc
gaacacatcgagggccatgccgccgaagtgttccgccacgcctgccagcatggcatggaa
gggatcgtgctcaagcgcgccgatgccccgtacacagggcggcgcgaccgctactggctc
aagctcaagtgcgagcatcggcaagagttcgtcatcgccggctataccgaacccgccggc
caacgcagcggctttggggccatcctggtgggagtctacgatgagcacgagcagttgcgc
tacgccgggcgggtgggcaccggtttcgatgacaagctgctggagacgctgctcaagcag
ttcggcccgctggagcaggaccagccagcctttgccaatccacctaccggccagcagcgg
cgcggggtccattggctcaggccggcgctggtggccgaggtgcgctttgcccaatggacc
agcgccggcatcctgcgccatggcagcttcgtggccctgcgcgaagacaaggacccgcac
cagatccgacgcgaaggcccgcagcccctcgccgaggcaaaggccgatgccaaggcgccg
gccgctgcgcccgcgcgcagccgtggcaaggccagcgatctctctgcacccgtcaccgtg
gccggggtgaagctgacccatcccggcaagatcctctttcccgataccgggctgaccaag
ctggaactggcgcgctattaccagagcgtggcgccgtggatattgcccgaactcaggcaa
cgaccgctgtcgctggtgcgttgcccggacggacatgctggcaagcgcttcttccagaag
cacaccgggcaaggcatgcccgaggccatcgacaccatcgaggtgccggaaggcgagggc
catgcccagtacatgatggtcaacgatgtggccggcctggtcgccaccgtgcagatgggc
gtgctggagctgcatgcctggggcgcgaccggcgctgccctgaatcaccccgaccgcgtg
gtgttcgacctcgatcctgctgacgacgtaccctgggccacggtggtggagggcgcccag
ctggtgcgggggctgttgaaagagatcggactggactgtttcctcaagacctcgggtggc
aagggtctgcatgtgatggtgccgatccggccggaacacgactgggccgtggtcaaggat
tgggcgcaccggttcgccgcgcacctggcgcggcacctgccggaccgtttcatcgccaag
atgagcaaggccgctcgtaacggcaagatctttatcgactatctgcgcaatgcgcccggc
gcgaccacggtggtggcctattcggtgcgcgcccgcgatggtgcgccggtgtcggtgcca
atcacctgggaagagctggaacagggcaagggcatcaaggccgatcatttccgggtgtcc
accatgccggcgcgcatccgcagcctggagcagcacgatccttgggcccacttcgggcag
gctccgcagcgcctcaccaaggccatgctggcggcctttgacagcgtctga
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