Herbaspirillum seropedicae Z67: ACP92_12160
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Entry
ACP92_12160 CDS
T04519
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
hsz
Herbaspirillum seropedicae Z67
Pathway
hsz02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACP92_12160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsz03021
]
ACP92_12160
Transcription machinery [BR:
hsz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACP92_12160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
HTH_28
Spo0A_C
HTH_24
HTH_36
HTH_31
HTH_IclR
HTH_38
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AKN65910
LinkDB
All DBs
Position
complement(2762107..2762631)
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AA seq
174 aa
AA seq
DB search
MPVPHTVHAQRFHTLYSEHHGWLQQWLRRRVGSSFDAADLAQDTFLRVLGKPGALDGVRE
PRAWLSRIAHGLVVDKLRREEVERTCLEAIAHLPEPEVVSPEARLILVEALCMIDALLEG
LGERARQAFLLSRLDEMSYPEIARHLGVSLSSVEKYMAAAIRHCYLMRQSLQAA
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgccgcacaccgtccatgcccagcgcttccatacgctctacagcgagcaccat
ggctggctgcagcaatggctgcgacgacgcgtgggcagcagtttcgacgccgccgacctg
gcccaggacaccttcctgcgcgtgctgggcaagccgggcgcgctggatggagtgcgcgag
ccgcgcgcctggctcagccgcattgcccatggcctggtggtggacaagctgcgccgggaa
gaggtcgagcgcacctgcctggaagccattgcccatctgcccgagccggaagtggtctcg
ccggaagcgcggctgatcctggtggaggccttgtgcatgatcgacgccctgctcgaagga
ctgggtgaacgcgctcgccaggctttcctgctctcgcggctggacgagatgagctatccg
gaaatcgcccgtcacctgggcgtatcgctgagcagcgtggaaaaatacatggccgcggcg
atccgccattgctacctgatgcggcagtccctgcaggcggcctga
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integrated database retrieval system
