Hymenobacter tibetensis: MTX78_20490
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Entry
MTX78_20490 CDS
T08236
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
htb
Hymenobacter tibetensis
Pathway
htb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
htb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MTX78_20490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
htb03400
]
MTX78_20490 (mfd)
Enzymes [BR:
htb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTX78_20490 (mfd)
DNA repair and recombination proteins [BR:
htb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MTX78_20490 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UOG74486
LinkDB
All DBs
Position
complement(5083891..5087442)
Genome browser
AA seq
1183 aa
AA seq
DB search
MKVSDFLQLYSLDPTVMTVGARLNPATRNSLRGAAPAEAVAHPRLHLRGLVGSQDAVLAA
AMHTAFPDQHHLFILHDREEAAYFLADLQHLLPNEEPLLFPSSYKRPYAFDETENANVLM
RAEVLNKLNSHRGPKTAAEQATEDAEDAADTAAAETDAKPKGKKGARASVKDTAGAIIIT
YPEALFEKVINKKSLVANTFIVKNGDKLDVNFISEMLAEYDFERTDFVYEAGQFAVRGGI
VDIFSYANELPYRIELFGDEVETIRTFDPESQLSVEKREQVSIIPNVQTKLLQETREAFL
DFIPKNTTVWAKDMRQTLDVVEESFDKAEAGFQELLLTAGGTQIVSKPEDLFETGKSFKK
LLEGFAVVEFGKRFHYKAGAEEFQFTAKPQPSFNKDFNRLVKNLHENQEKGYTNIIAAES
VRQADRLRTIFDELDNNVQFQHLLLGLREGYVDETLKLVVYTDHQLFERFYRAQEGRKFS
KKKALTLKELRTLSPGDYVVHQDYGIARFAGLTQVEINDRVQEAIRLVYRDDDVLTVSIH
ALHKIAKYSGAEGTPPNMSKLGSPEWENKKKSVKKKVKDIAAELIRLYAKRKTAPGHAFA
MDSFMQAELESSFIYEDTPDQAKATEDVKRDMEVPHPMDRLVCGDVGFGKTEVAIRAAFK
SVADGKQVAVLVPTTILAMQHYKTFRERLAALPVTVEYVNRFKSTKQIKETLGRVAEGKT
DILIGTHRLTNKDIKFKDLGLLIIDEEQKFGVKTKDKLKELKVNVDTLTLSATPIPRTLH
FSLMGARDLSVIATPPPNRQPVQTELHVFDELLVRDAVAREIKRGGQVFFVHNRVKDIDE
LANMVLRLVPDARVTTIHGQMEGDLLEKRMMKFVDGDYDVLVSTNLIESGLDIPNANTII
INRAHMHGLSDLHQMRGRVGRSNKKAYCYLLTPPVAGLPSDARKRLSTLEEFSDLGDGFK
VAMRDLDIRGAGNLLGGEQSGFINDLGFETYHQILDEAVTELKETEFRDLFLGDPTERLQ
AAVKASGPKECNIETDLQILIPDSYVSNVSERLQLYSKLDRVKGPEELRKLVAGIVDRFG
PLPAEVEQLADIVRLRWQACQVGFEKLTLKKNLLKGYISATNNEPYFQSDTFGNILSYVQ
THTRTASMKERKEQLIVSIEEVKSVQVAKRILSELGSEEKVGV
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggtttctgattttctccagctatactctctcgaccctaccgtcatgaccgtgggg
gcccgcctgaacccggccacgcgcaactcgctccgcggcgctgcgccggccgaggctgtg
gcacacccgcggctgcacttgcgcggccttgttgggagccaagatgcggtgctggctgcg
gctatgcacacggcatttcccgatcagcaccacttgttcatcctgcacgaccgggaggag
gcggcgtatttcctggccgacttgcagcacttgctacccaacgaggagccgctgctgttt
ccaagctcctataagcgaccttacgctttcgacgagacggaaaatgccaacgtgctgatg
cgggctgaagtgttgaacaagctgaactcgcaccgcggacctaaaaccgccgctgagcaa
gccaccgaagacgcggaagatgctgccgacacggccgctgcggaaaccgacgccaagccc
aagggcaaaaagggtgcgcgggccagcgtgaaagacacggccggtgctatcatcatcacg
tacccggaggcgctgttcgagaaggtaatcaacaagaaaagtttggtggccaacacgttc
attgtgaagaacggcgacaagctggacgtgaacttcatcagtgagatgctggcggagtac
gacttcgagcggaccgattttgtgtatgaggcggggcagtttgcggtgcgcggcggtatc
gtggacatcttctcatacgccaatgagctgccgtaccggatagagctgttcggcgacgag
gtggaaaccatccggacgttcgacccggaaagccagctgtcggtggagaagcgggagcag
gtgagcatcatcccgaacgtgcaaaccaagctgctacaggaaacccgggaggcgttcctg
gacttcattccgaagaacaccacggtgtgggccaaggatatgcgccagaccctggacgtg
gtggaagaatcgttcgacaaggccgaggcaggcttccaggagctgctgctgacggcgggc
ggcacccaaattgtgagcaagcccgaggacttgtttgagacagggaagtcgtttaagaag
ctgctggaagggtttgcggtggtggagttcggcaaacggttccactacaaggcgggggcc
gaggagtttcagttcacggccaagccgcagccaagcttcaacaaggacttcaatcggctg
gtgaagaacctgcacgaaaaccaggagaaaggctacaccaatatcattgcggccgaatcg
gtcaggcaggcggaccggttgcggaccatcttcgacgagctcgacaataacgtacagttt
cagcacttgctgctggggctgcgcgaaggctacgtggacgagacgctgaaactggtggtg
tacaccgaccaccagctgttcgagcggttctatcgggcgcaagaaggacgcaagttctcg
aagaagaaagcgctgaccttgaaggagttgcggacgctgagccctggcgactacgtggtg
caccaggactacggcattgcgcgctttgcgggcctcacgcaggtggaaatcaacgaccgg
gtgcaggaagccatccggctggtgtaccgcgacgacgacgtgctgacggtgagcatccac
gccctgcacaagattgccaagtactcgggcgccgagggtacgccgcccaatatgagtaag
ctgggctcgccggagtgggaaaacaagaagaagtcggttaagaagaaagtgaaggacatt
gcggccgagctgattcggctgtacgccaagcgcaaaaccgcgcccggccacgccttcgcc
atggactcgtttatgcaggccgagctagaatcgagcttcatctacgaagacacgcccgac
caggccaaggccaccgaagacgtgaagcgcgacatggaggtaccccaccccatggaccgg
ctggtgtgcggcgacgtgggcttcggcaagacggaagtggctattcgggcagcgtttaag
tcggtggccgatggcaagcaggtggccgtgctggtacctaccaccatcttggccatgcag
cactacaaaacgttccgggagcggctggcagctctgcccgtgacggtggagtacgtgaac
cgcttcaagagcaccaagcaaatcaaggagacgctgggccgggtggccgagggcaaaacc
gacatcctgattggcacacaccgcctcaccaacaaagacatcaagttcaaggacctaggc
ttgctcatcattgacgaagagcagaagttcggggtgaaaaccaaggacaagctcaaggaa
ctgaaggtgaatgtggatacgctcacgctgtcggcgacgccgataccgcgcacgctgcac
ttctcgctgatgggcgcccgcgacttgagcgtgattgccacgccgccgccgaaccgccag
ccggtgcaaaccgagctgcacgtgtttgatgagctgctggtgcgcgacgcggtggcccgc
gaaatcaagcgcggcgggcaggtgtttttcgtgcacaaccgcgtgaaagatatcgacgaa
ctagccaacatggtgctgcgcctggtgcccgatgcccgcgtaactaccattcacggccag
atggaaggcgacctgctggaaaagcgcatgatgaaattcgtggacggcgactacgacgtg
ctggtgagtaccaacctgattgagtcgggcctggacattccgaacgccaacaccattatc
atcaaccgcgcccacatgcacggcctctccgacctgcaccagatgcgtgggcgcgtgggc
cgttccaacaagaaagcctactgctacctactcacgccgccggtggccggtttgccttcc
gatgcccgtaagcgcctaagcacgctcgaagagttttccgacctcggcgacgggtttaag
gtggccatgcgcgacctggacatccggggggccggcaacctgctgggcggtgagcagtcg
ggcttcatcaatgacttaggctttgaaacctaccaccagattctggacgaggccgtgacg
gagctcaaggaaaccgagttccgcgacctgttcctcggcgacccgaccgagcggctgcaa
gcggccgtgaaagccagcggccccaaggagtgcaacatcgagacggacctgcaaatcctg
attcccgactcctacgtgagcaacgtgtcggagcgcttgcagctgtatagcaagctcgat
agggtgaagggccccgaggagctgcgcaagctggtggccggcatcgtggaccggtttggg
ccgctgccggcagaagtggagcagctggccgacatcgtgcggttgcgctggcaggcctgc
caagtgggcttcgagaagctgacgctgaagaagaacctgctcaaaggctacatctcggcc
actaacaacgagccttacttccagagcgacactttcggcaacatccttagctacgtgcaa
acccacacccgcacggccagcatgaaggagcgcaaagagcagctcatcgtcagcatcgag
gaggtaaaaagcgtgcaagtcgccaagcgcatcctcagcgagttaggcagtgaggagaag
gtgggagtgtag
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integrated database retrieval system
