Hydrogenophilus thermoluteolus: HPTL_0877
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Entry
HPTL_0877 CDS
T05630
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
htl
Hydrogenophilus thermoluteolus
Pathway
htl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
htl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPTL_0877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
htl03400
]
HPTL_0877
Enzymes [BR:
htl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPTL_0877
DNA repair and recombination proteins [BR:
htl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPTL_0877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SecA_DEAD
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBD77145
UniProt:
A0A2Z6DXV9
LinkDB
All DBs
Position
complement(937019..940501)
Genome browser
AA seq
1160 aa
AA seq
DB search
MIPDSFHLPKAGQRAKLPLPYSGLAAPYLAELKRRTRAPLVLLAANAAETLRIQAELTFF
APMLRVCHFPDWETLPYDPFSPHQDLISERLATLFAITQQGVDVVVTSVAAALPRLTPPA
FVAGRMFRIRKGETLDLAAFKAQLTLAGYEPAAQVLRPGEFAIRGGIIDLYPMGAALPYR
LELFDDEIETIKTFDPDTQRTLYPVEAIELLPAREFPTDDDGRTTFRRRFRETFEGDPSK
VALYKQVSQGLLPAGIEYYLPLFFDKTATLFDYLPDALWVTLGPVAETVTADWQEALDRY
RLLNTDPDRPLLPPDAWMAPPEAFHGRLSACARIDLALPEHAEDELPPIALDARAEQPAA
ALAAWLDTHRDWTVLLAVSSEGRRETVREKLRAVGWEPSDVREWETFLAERPPLALTVAP
VENGFLDAERRLAFFGEAELFAHLVRRKGGTKRKHAAHDPEAWIRDLTELTPGAPVVHLE
HGIGRYRGLVRLAGPEGEAEFLHLEYAGGAALYVPVTQLALIGRYLGTDPETVPLHELGS
GQWEKEKRKAAEKAHDTAAELLALYAERAARGGERFAFDAASYEAFAAGFPFETTPDQQA
AIDAVIADLTSGKVMDRLVCGDVGFGKTEVALRAAFLAAMNGRQVAILTPTTLLAEQHTQ
TFRNRFAGWPLQIAELSRFTSSKNQKATLAALADGTVDIVIGTHRLIQPDVRFARLGLVI
IDEEHRFGVRQKEALRTFCAHVHTLSLSATPIPRTLGMALEGVRDFSVIATPPAKRLAVK
TFVVKKSDALIREAVARELRRGGQVFYVHNEVRTIGNALEALQKLLPNVRIGVVHGQMSE
IELERVMRDFIHQRLQVLLCTTIIETGIDIPNANTILIERADRFGLAQLHQLRGRVGRSH
HQAFAYLMLDPHIKPTAAGARRLEAIAQAESLGGGFTLAMHDLEIRGAGEILGEAQSGAI
ESVGFALFTQMLQNAVRRLKAQNATSEAPGKAAQSDASASESLLAAFAVTTEITLGEPAL
LPETYCPDIAVRLDLYKRLADAADDEAVDALKSELIDRFGPLPPQAVALIATHRLRIRLL
PYRVARVDANAQRILVRFATDAPVDPTKVVALIQSDRTVQIKGSDTLVRTGTFPTHAERA
AAVERLVQSVMAQTNHATIA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgattcctgactcctttcatctcccaaaagcggggcaacgggcgaaactgccgctcccc
tactctggactcgctgctccctaccttgcggaattgaagcgccgcacacgcgcaccgctc
gttctgctggcggcaaatgccgccgagacgctccggatccaagccgaactcacctttttt
gcaccgatgctccgcgtttgccactttcccgactgggaaacgctaccctacgatcccttt
tccccacaccaagacctgatctccgaacggctggcgacgctctttgccatcacgcagcag
ggggtcgacgtcgtcgtcacttcggtggccgctgcgctgccgcggctcacgccaccggcg
tttgtcgccggccgcatgttccgcatccgcaagggggaaacgctcgaccttgcggcgttc
aaagcccaactgaccctggccggatacgaaccggcggcccaggtgcttcgcccaggagag
ttcgcgatccgaggcgggatcatcgacctctacccgatgggcgcagcgcttccttatcgg
ctcgaactcttcgacgacgagatcgaaacgatcaaaacgttcgaccccgacacccagcgc
acgctctacccggtggaggcgatcgaactcttgccggcacgcgaattcccgaccgacgac
gacggccgcacgaccttccgccgccgttttcgcgaaaccttcgagggcgatcccagcaaa
gtggccctctacaaacaggtcagtcaggggttgctgcccgctgggatcgaatactatctg
ccgctctttttcgacaagaccgccacgctcttcgactatctgcccgacgcgttgtgggtt
accttgggccccgttgccgaaaccgtcacggccgattggcaagaagcgctcgaccgctac
cggctgctcaacaccgacccggatcgcccgctgctgccaccagacgcctggatggcgccg
cccgaggcatttcacggacggctctctgcctgtgcgcggatcgacctcgcgcttcccgaa
cacgctgaggacgaactcccccccatcgccctcgatgcgcgcgccgaacaaccggctgct
gcattggccgcatggctcgacacccaccgcgactggaccgtgctccttgccgtttccagc
gaaggacgtcgcgaaacggtgcgcgaaaaattgcgcgcggtgggctgggaaccgagcgac
gtgcgcgagtgggaaaccttcctggcagaaagaccgccacttgcgctcacggtcgcgccc
gtggaaaacggctttctcgacgcggaacggcgcctcgcctttttcggtgaagcggagctc
ttcgcgcatctggtgcggcgcaaagggggaacgaaacgcaaacacgccgcacacgatccc
gaggcgtggattcgcgacctcaccgaactcacccccggtgcccctgtcgtgcacctcgaa
cacggaatcggacgctaccgaggcctcgtgcgccttgccggccctgagggtgaagcggaa
ttcctccacctcgaatatgcggggggcgccgcgctctacgtcccggtgacccaactggcg
ctcattggccgctacctgggaaccgaccccgaaacggtgccgcttcacgaactcggttcc
ggtcagtgggaaaaagagaaacgcaaagcggcggaaaaagcgcacgataccgcggcagag
ctcctggcgctctatgctgagcgggccgcgcgcggtggcgaacggttcgcattcgacgcc
gccagctatgaagcgttcgccgccggttttccgttcgaaaccacgcccgaccaacaagcc
gcgatcgacgcggtgatcgccgacctcacctctggcaaagtgatggatcggttggtgtgc
ggcgacgtcggtttcgggaaaaccgaagtggcgcttcgcgccgcgttccttgccgcgatg
aacgggcgccaggtggcgatcctcacgccaactaccctgttggccgaacagcacacccaa
acctttcgcaaccgctttgccggttggccgctccaaattgccgagctctcgcgctttacc
agcagcaaaaaccagaaagcgacgttggcggcgcttgccgatggtaccgtcgacatcgtc
atcggcactcatcgcctcattcagcccgacgtgcgctttgcgcggctcggcttggtgatc
atcgacgaagagcatcgcttcggcgtgcgccagaaagaggcgctgcgtaccttctgcgcg
cacgtccataccctttccctttcggccacaccgattccccgcacgctcgggatggcgctc
gaaggggtgcgcgacttttcggtaattgccacccccccggcgaaacggcttgcggtcaaa
acgttcgtcgtcaaaaagagcgacgcgctcattcgcgaagccgttgcgcgtgaattgcgg
cgtggcggtcaagtcttctatgtgcacaacgaggtgcgcaccatcggcaatgcgctcgaa
gcgttgcaaaaattgctgcccaacgtccggatcggcgtcgtgcacggccaaatgagcgaa
atcgagctcgaacgggtgatgcgcgacttcatccaccagcggttgcaggtgcttctttgc
accaccatcatcgaaaccggtatcgacatccccaacgcgaacaccatcctgatcgaacgc
gccgaccgctttggactggcgcaactgcaccaattgcgggggcgggtcggtcgcagccac
caccaagcgttcgcctatctgatgctcgacccacacatcaagccgaccgctgccggtgcg
cggcggttggaggcgatcgcgcaagcggaatcgctcggcggcggtttcaccctggcgatg
cacgatctggagattcgcggcgcaggggaaatcttgggcgaagcgcaatcgggcgcgatc
gaatcggtcggattcgcgctctttacccagatgctgcaaaacgcggttcgtcgcctcaaa
gcgcagaacgcgacgtcagaagcgcccggtaaagcggcacagagcgatgcgtctgcctca
gagtcgctccttgctgcgtttgcggtaaccactgaaatcaccttgggcgaaccggcgttg
cttcccgaaacctattgtcccgatatcgcggtgcgcctcgacctctacaaacggctcgcc
gacgctgccgacgacgaggcggtcgatgcgctcaaaagcgaactgatcgaccgcttcggg
ccgctgccaccgcaagccgttgcgctcatcgcgacccatcggctgcgcattcggttgctc
ccgtatcgggtagcccgcgtcgacgccaacgcgcaacggatcctggtgcgattcgccacc
gatgcccccgtagacccgaccaaagtggtcgcgctcatccaaagcgaccgaacggtgcag
atcaaaggcagcgacaccttggtccgaaccggcacgtttcccacgcatgccgagcgcgcc
gcggccgttgagcgcctggtgcaatcggtaatggcccaaaccaatcacgccacaattgcg
taa
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