Hydrogenimonas thermophila: RZR91_01845
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Entry
RZR91_01845 CDS
T09456
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
htm
Hydrogenimonas thermophila
Pathway
htm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
htm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RZR91_01845 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
htm03400
]
RZR91_01845 (mfd)
Enzymes [BR:
htm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RZR91_01845 (mfd)
DNA repair and recombination proteins [BR:
htm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RZR91_01845 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
NEPRO_N
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WOE70325
LinkDB
All DBs
Position
357611..360583
Genome browser
AA seq
990 aa
AA seq
DB search
MIEANFYDYLQQKEPPQILVVENDKEAQTAKAVAKILGFETVVLPDFRATFGEDLRSWKE
ELFELNSALKDYYQKNIQNSLLIVPFHTLIYSLPKPELLDTFSIAFGDDIDLENLKNRLY
AWGYSFVDVVEIKGEVSIRGDIIDIFSPNANNPWRISLFDTEVESIRTFEVENQKSNKNE
EIEEIMIAPALFSFSTEQFEALQKKVEASDSDVFVKDVASLGFWYLDELSHDLMAGKRAV
AIKNLQDEIAFAYEHAKNALPKERFNLEVIPETKRVKVIEPINVDLLTENYPERELVIVA
ESDALVRRSPIKELARATIVKTDGVVNLLTPDKIIVSLNKPFKKRVVKRPTILLDDLKPG
DYVVHESYGVGIFKGIEPHQVLGAMRDFVHITYQNDDTLLLPVENLDMIDRYIAEGGSLP
VLDRLGKGGFGKLKAKVKDRLFAIASEIVNMSAKRLLMKGAVIKTDIPELMQFREAAGFE
YTPDQIKAVEEIFADLSSGRVMDRLLSGDVGFGKTEVAMNAILAVVKSGYQSAFVVPTTL
LSSQHFKSVRDRLDPFGVRVDKLDRFTTAKQKKRILEELEKGELDVVIGTHALLGATFKN
LGLVIIDEEHKFGVKQKEALKQMSVNVHLLSMSATPIPRSLNMALSKIKGYSELRTPPVE
RKGVRTFVKSFDETVVKEAIMRELRSGGQLFYVYNSIAGIESKKEELLEILPDLRILILH
SKITAVQTEKEILKFDAGQYDLLLSTSIIESGIHMPKVNTMIVDGADRFGMADLHQLRGR
VGRGKLEGYCYFLVENKDALSEQAKRRLIALESNSFLGSGAVLAYHDLEIRGGGNLIGES
QSGHIKQIGYALYLKMLEDAIRALSQESAPERKRVDIKLSITAYISEELVSHDRVRLELY
RRLSSCESVHDVIEIEQEIEDRFGKPDLPTRQFLDLVTIKVLAQQKGVERISNYNEHITI
QYNEENKTTCKARSRDDDDLIATVLEELRK
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagcaaatttttatgactatcttcaacaaaaagagccacctcaaattttggtg
gtagaaaatgataaagaggcacaaactgccaaagcagtagctaaaattctcgggtttgag
acagttgtactaccagattttagagccacttttggagaagaccttagaagctggaaagaa
gagctatttgaactcaatagtgctttaaaagattattatcaaaaaaatatccaaaattcc
ctattaatagttcctttccatactctcatctattcactgcctaaacctgaactcttagat
actttctctattgcctttggtgatgatatagatttagagaatctcaaaaataggctctat
gcgtggggttacagttttgtagatgtcgttgaaataaaaggtgaagtgtcaattcgtggg
gatattatcgatatcttttcacctaatgccaataacccttggcgtataagcctttttgat
acagaagttgagagtattcgcacctttgaagttgagaaccaaaaatcaaacaaaaatgaa
gagattgaagagattatgattgctccagcactcttttcattctcaacagagcagtttgaa
gcattacaaaaaaaagttgaagcaagcgatagtgatgtctttgtcaaagatgttgcctca
ctgggcttttggtatttagatgagctttcgcacgatttgatggcaggtaaaagagctgtt
gcgattaaaaatttgcaagatgaaatagcatttgcatatgagcatgcaaaaaatgcactc
cctaaagagcggtttaatttggaagtaattcctgaaacaaaacgagttaaagtgattgaa
cctatcaatgtcgatcttttgacagagaattaccctgaaagagagttggtgattgttgct
gagagtgatgcactggttagaaggagccccattaaagagttggcacgggcaacgattgtc
aaaactgacggagttgttaatcttctaacaccagataagatcattgtctctttaaataaa
ccatttaaaaaacgtgtcgttaaacgaccaactattttacttgatgatctcaaaccaggg
gattatgtcgtacacgaaagttatggtgtagggatctttaaaggaattgaaccgcatcag
gtattgggggcaatgcgtgattttgtccatatcacttaccaaaatgacgatactttgcta
ttgccggttgaaaaccttgatatgatcgaccgctacattgccgaagggggttcactacct
gttcttgatcgccttggtaagggtggatttggcaaactcaaagcgaaagtaaaagatcgt
ctctttgctattgctagtgagattgtgaatatgtcggcaaagcgcttattgatgaaaggt
gctgtcattaagaccgatattcctgaacttatgcagtttcgtgaagcggcaggttttgaa
tatacacccgatcagattaaagcagttgaagagatttttgctgatctctccagtgggcgc
gtgatggatagacttcttagcggtgatgttggatttggtaaaacagaagtggcgatgaat
gctattttagcggtggtgaagtctgggtatcagagtgcttttgttgtaccaacaacactg
ctaagcagccaacactttaaaagtgtccgtgatcgtctagatccttttggtgtgcgtgtt
gataaacttgaccgttttacgacagccaaacaaaaaaagcgtattttagaagagcttgag
aagggtgagcttgatgttgttattggtacacatgcactgcttggagcgacttttaaaaac
cttgggcttgtgattatcgatgaagagcataaatttggtgtaaagcaaaaagaggcacta
aaacagatgagtgtgaatgttcaccttttgagtatgagtgcaacaccgattccaagaagt
ctcaatatggcactgagtaaaattaaagggtacagtgaactgcgaacacctcctgtggag
cgcaaaggggtgcgaacctttgtcaagagttttgatgaaacagttgtaaaagaggcgatt
atgcgtgaattgcgcagtggagggcaacttttttatgtctataactcgattgcagggatt
gagagtaaaaaagaggagcttcttgagatcttacctgatcttcgtattttgattcttcac
tctaaaattacagcagttcagacagaaaaagagatcctcaaatttgatgcaggtcagtat
gacttgttgcttagtacctccattatcgaatcgggtattcatatgcctaaagtcaatact
atgatagttgatggagctgataggtttggtatggctgatttgcatcagcttagaggacgt
gttggtcggggtaaattggaagggtattgttacttccttgttgaaaacaaagatgcttta
agtgaacaagccaaacgacggttgattgcactagaatctaactcattccttggtagcggt
gcagtcttggcatatcacgatcttgagattcgaggtggtggtaacttgatcggtgagagt
cagagtggacatattaagcagataggttatgcactctatttgaagatgcttgaagatgct
attcgtgccttaagccaagagagtgcaccagaacgaaaacgagttgatattaaactttcc
attactgcatacatctctgaagagttagtatcgcatgatagggtgcgtttagagctttac
cgacgtttgagtagctgtgagagtgtgcatgatgtcattgagattgagcaagagattgaa
gatcgttttggtaagcctgatcttccaacacgccaattccttgatcttgtaactattaaa
gttctagctcaacaaaaaggagttgagcgaataagcaattacaatgagcatattacaata
cagtataatgaggagaataaaacgacttgtaaggcacgaagtcgtgatgatgatgacttg
attgcaacggtgttggaagagcttagaaagtga
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