KEGG   Hypericibacter terrae: FRZ44_20880
Entry
FRZ44_20880       CDS       T06396                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
htq  Hypericibacter terrae
Pathway
htq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:htq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FRZ44_20880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:htq03400]
    FRZ44_20880
Enzymes [BR:htq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FRZ44_20880
DNA repair and recombination proteins [BR:htq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FRZ44_20880
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase CHDII_SANT-like
Other DBs
NCBI-ProteinID: QEX16793
UniProt: A0A5J6MH47
LinkDB
Position
2243086..2245761
AA seq 891 aa
MTSEPTRGSTSASGDRSLARYRAKRDFKATPEPRGLKARSRGHRYLIQKHAARRLHYDFR
LELDGVLKSWAVTRGPSLDPADKRLAVHVEDHPLDYGSFEGIIPKPQYGGGTVMLWDEGS
WEPLGDAHAMLRAGRLKFRLDGERLKGEWNLVRMRNRSPREKRENWLLIKGHDSAARPGE
GDSLLEMEDSSVVSGRSMEEIGRSRSVWNSKARQDDKTAKPAAELKGRPSPSDRRAAPTK
AAKRTALPDFVEPQLATRVEAPPEGADWLHEIKLDGYRIQARLERRKARLLTRRGLDWSH
RFASIAAAIEALPAKTALFDGEIVAFAENGLSDFGRLQAILGGEEEGELAFVLFDLLYLD
GYDLRPLPLLERKARLLRLLGANERGPLRFSQHFDRDGAEIYRHACELALEGVVSKQAHA
PYRPGRGLGWLKSKCRERQEFVIAGFTKPAKGLPGIGSLALGYGSEGAFRYAGRVGTGFS
QQQSLALRRRLERIRQDKPPFDALPAAVRRGVTFVKPTLVCEIEFATWTRDGLVRQASFL
GLREDKPASQITREKIMARASTPSSRTEKEKPARPTRRKPTAAAKDEAARSSKEESFHGV
RLTHPDKLLYKEQGITKQDLAQYYVDVADYIMPHVRRRPLAIVRCPDGASGACFYQKHLS
AGMPDAIKPFSVKGRTGRETYVSIEDVRGLIALVQFGVLELHPWGASVDDVDKADRIIFD
LDPDPGVAWPDVVSAAEEVRERLKELKLESFLKTTGGKGLHVVAPLKPAIAWEPVKRLTQ
VVAMSMASDNPARYLAKASKAARKGKIFVDYLRNDRGSTAVAPYSTRAREGAPISAPLEW
RELGPRVKSDQFCLENIRDRLARLKRDPWEGFFKLRQSLNSKTLAQLEASP
NT seq 2676 nt   +upstreamnt  +downstreamnt
atgacgtccgagccgacgcgcgggtcgacgtctgcgagcggcgaccggtcgctggcgcgc
tatcgcgccaaacgggacttcaaggcgacgcccgaaccgcgcggcctcaaggcccgctcg
cggggccaccgttacctgatccagaaacatgcggcgcgccgccttcattacgatttccgg
ctggaactggatggcgtgctgaagagctgggccgtcacccgcggtcccagtctcgatccc
gccgacaagcgtcttgcggtccatgtcgaggaccatccgctcgactatggcagcttcgag
ggaatcatcccaaagccccaatatggcgggggcacggtgatgctgtgggacgaaggcagc
tgggagccgctcggcgatgcccatgccatgctccgggccggccggctcaagtttcggctc
gacggagaacggctgaagggcgaatggaatctggtccggatgcgaaaccgctcgccgcgc
gagaagcgcgagaattggctcctgatcaagggccatgatagcgcggcgcggccgggtgag
ggcgacagtcttctggaaatggaagatagcagcgtcgtctccggccgcagcatggaggaa
atcggccgcagccgatcggtctggaacagcaaggcgcggcaagacgacaagacagcgaaa
ccggctgccgagctgaaggggcggccatcgccatcggacaggcgggccgcgccgacgaaa
gcggccaagcgcaccgcgctgccggatttcgtcgagccgcaactggccacccgggtcgaa
gcgccgcccgagggggccgactggctgcatgagatcaagctcgacggttaccggatccag
gcgcggttggagcgacgcaaggcacggcttctcacgcgccgcgggctggactggagccac
cgtttcgccagcatcgccgcggccatagaagcgctccccgccaagaccgccctgttcgat
ggcgagatcgtcgccttcgccgagaacgggttgtccgacttcgggcgcctgcaggcgatc
ctgggcggcgaggaggagggcgagctcgctttcgtactcttcgatctcctctatctcgac
ggctatgaccttcgtcccctgccgctgctcgagcgcaaggcgaggctgttgaggctgctg
ggcgcgaacgagcgcggcccgctgcgcttcagccagcatttcgaccgcgatggcgccgag
atctatcgccatgcctgcgagctcgccctcgaaggcgtggtgtcgaaacaggcgcatgct
ccctaccggccgggccgagggctcggttggctcaaatccaaatgccgcgagcgacaggaa
ttcgtgatcgccggtttcaccaagccggcgaagggcttgcccggcatcggatcgctggcc
ctgggctatggcagcgagggggcctttcgctatgcgggccgcgtcggcaccggcttcagc
cagcagcagtcgctggccttgaggcgcaggctcgagcgaatccgtcaggacaagccgccc
ttcgacgcgctgccggcggccgtccggcgtggcgtcacattcgtcaaaccgacgctggtg
tgcgagattgagttcgccacctggacgcgggatggtctcgttcgccaggcctcgtttttg
ggcttgcgcgaagacaagcccgccagccagatcacacgcgagaaaatcatggcacgcgcg
agcacgccgtcgtcgaggaccgagaaggaaaagcccgcccgtcccacccggcgaaagccg
accgcagccgcgaaggacgaggcagcgcgctcctcgaaggaggagagtttccatggcgtc
cggctcacccatcccgacaagctcctctacaaggagcagggcatcaccaagcaggacctg
gcgcagtattatgtcgatgtcgcggactacatcatgccgcatgtgcgccggcgcccgctg
gcgatcgtgcgctgcccggacggcgccagcggcgcctgcttctaccagaagcatctctcc
gccggaatgcccgacgccatcaagcccttcagcgtcaagggcaggaccgggcgcgagacc
tatgtctcgatcgaggatgtgcgaggcctgatcgcgctggtgcagttcggtgtgctggag
ctgcatccctggggcgcttcggtcgacgatgtcgacaaggcggatcgcatcatcttcgat
ctcgatcccgatcccggcgtcgcgtggccggacgtcgtcagtgcggccgaggaggtgcgc
gagcggctgaaggaactcaagctcgaaagctttctcaagacgacgggcgggaaggggctg
catgttgtcgccccgttgaagcccgcgatagcgtgggagccggtcaagcgtttgacgcag
gttgtcgccatgagcatggcatccgacaatcccgcgcgttatctggcgaaggcgtcgaaa
gcggcgcgcaagggcaagatcttcgtcgattatcttcgcaacgaccgcggctcgacggca
gtcgcaccctattcgacccgggcgcgcgaaggggcaccgatatccgcgccgctcgagtgg
cgcgagctcggaccccgcgtcaaatccgatcaattttgtctcgaaaacatccgggatcgg
ctggcccggttgaagcgcgatccctgggagggctttttcaagctccgccagagcctgaat
tcgaaaacgctggcgcaactggaagcgtcgccttga

DBGET integrated database retrieval system