Hypericibacter terrae: FRZ44_20880
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Entry
FRZ44_20880 CDS
T06396
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
htq
Hypericibacter terrae
Pathway
htq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
htq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FRZ44_20880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
htq03400
]
FRZ44_20880
Enzymes [BR:
htq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FRZ44_20880
DNA repair and recombination proteins [BR:
htq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FRZ44_20880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
CHDII_SANT-like
Motif
Other DBs
NCBI-ProteinID:
QEX16793
UniProt:
A0A5J6MH47
LinkDB
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Position
2243086..2245761
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AA seq
891 aa
AA seq
DB search
MTSEPTRGSTSASGDRSLARYRAKRDFKATPEPRGLKARSRGHRYLIQKHAARRLHYDFR
LELDGVLKSWAVTRGPSLDPADKRLAVHVEDHPLDYGSFEGIIPKPQYGGGTVMLWDEGS
WEPLGDAHAMLRAGRLKFRLDGERLKGEWNLVRMRNRSPREKRENWLLIKGHDSAARPGE
GDSLLEMEDSSVVSGRSMEEIGRSRSVWNSKARQDDKTAKPAAELKGRPSPSDRRAAPTK
AAKRTALPDFVEPQLATRVEAPPEGADWLHEIKLDGYRIQARLERRKARLLTRRGLDWSH
RFASIAAAIEALPAKTALFDGEIVAFAENGLSDFGRLQAILGGEEEGELAFVLFDLLYLD
GYDLRPLPLLERKARLLRLLGANERGPLRFSQHFDRDGAEIYRHACELALEGVVSKQAHA
PYRPGRGLGWLKSKCRERQEFVIAGFTKPAKGLPGIGSLALGYGSEGAFRYAGRVGTGFS
QQQSLALRRRLERIRQDKPPFDALPAAVRRGVTFVKPTLVCEIEFATWTRDGLVRQASFL
GLREDKPASQITREKIMARASTPSSRTEKEKPARPTRRKPTAAAKDEAARSSKEESFHGV
RLTHPDKLLYKEQGITKQDLAQYYVDVADYIMPHVRRRPLAIVRCPDGASGACFYQKHLS
AGMPDAIKPFSVKGRTGRETYVSIEDVRGLIALVQFGVLELHPWGASVDDVDKADRIIFD
LDPDPGVAWPDVVSAAEEVRERLKELKLESFLKTTGGKGLHVVAPLKPAIAWEPVKRLTQ
VVAMSMASDNPARYLAKASKAARKGKIFVDYLRNDRGSTAVAPYSTRAREGAPISAPLEW
RELGPRVKSDQFCLENIRDRLARLKRDPWEGFFKLRQSLNSKTLAQLEASP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgagccgacgcgcgggtcgacgtctgcgagcggcgaccggtcgctggcgcgc
tatcgcgccaaacgggacttcaaggcgacgcccgaaccgcgcggcctcaaggcccgctcg
cggggccaccgttacctgatccagaaacatgcggcgcgccgccttcattacgatttccgg
ctggaactggatggcgtgctgaagagctgggccgtcacccgcggtcccagtctcgatccc
gccgacaagcgtcttgcggtccatgtcgaggaccatccgctcgactatggcagcttcgag
ggaatcatcccaaagccccaatatggcgggggcacggtgatgctgtgggacgaaggcagc
tgggagccgctcggcgatgcccatgccatgctccgggccggccggctcaagtttcggctc
gacggagaacggctgaagggcgaatggaatctggtccggatgcgaaaccgctcgccgcgc
gagaagcgcgagaattggctcctgatcaagggccatgatagcgcggcgcggccgggtgag
ggcgacagtcttctggaaatggaagatagcagcgtcgtctccggccgcagcatggaggaa
atcggccgcagccgatcggtctggaacagcaaggcgcggcaagacgacaagacagcgaaa
ccggctgccgagctgaaggggcggccatcgccatcggacaggcgggccgcgccgacgaaa
gcggccaagcgcaccgcgctgccggatttcgtcgagccgcaactggccacccgggtcgaa
gcgccgcccgagggggccgactggctgcatgagatcaagctcgacggttaccggatccag
gcgcggttggagcgacgcaaggcacggcttctcacgcgccgcgggctggactggagccac
cgtttcgccagcatcgccgcggccatagaagcgctccccgccaagaccgccctgttcgat
ggcgagatcgtcgccttcgccgagaacgggttgtccgacttcgggcgcctgcaggcgatc
ctgggcggcgaggaggagggcgagctcgctttcgtactcttcgatctcctctatctcgac
ggctatgaccttcgtcccctgccgctgctcgagcgcaaggcgaggctgttgaggctgctg
ggcgcgaacgagcgcggcccgctgcgcttcagccagcatttcgaccgcgatggcgccgag
atctatcgccatgcctgcgagctcgccctcgaaggcgtggtgtcgaaacaggcgcatgct
ccctaccggccgggccgagggctcggttggctcaaatccaaatgccgcgagcgacaggaa
ttcgtgatcgccggtttcaccaagccggcgaagggcttgcccggcatcggatcgctggcc
ctgggctatggcagcgagggggcctttcgctatgcgggccgcgtcggcaccggcttcagc
cagcagcagtcgctggccttgaggcgcaggctcgagcgaatccgtcaggacaagccgccc
ttcgacgcgctgccggcggccgtccggcgtggcgtcacattcgtcaaaccgacgctggtg
tgcgagattgagttcgccacctggacgcgggatggtctcgttcgccaggcctcgtttttg
ggcttgcgcgaagacaagcccgccagccagatcacacgcgagaaaatcatggcacgcgcg
agcacgccgtcgtcgaggaccgagaaggaaaagcccgcccgtcccacccggcgaaagccg
accgcagccgcgaaggacgaggcagcgcgctcctcgaaggaggagagtttccatggcgtc
cggctcacccatcccgacaagctcctctacaaggagcagggcatcaccaagcaggacctg
gcgcagtattatgtcgatgtcgcggactacatcatgccgcatgtgcgccggcgcccgctg
gcgatcgtgcgctgcccggacggcgccagcggcgcctgcttctaccagaagcatctctcc
gccggaatgcccgacgccatcaagcccttcagcgtcaagggcaggaccgggcgcgagacc
tatgtctcgatcgaggatgtgcgaggcctgatcgcgctggtgcagttcggtgtgctggag
ctgcatccctggggcgcttcggtcgacgatgtcgacaaggcggatcgcatcatcttcgat
ctcgatcccgatcccggcgtcgcgtggccggacgtcgtcagtgcggccgaggaggtgcgc
gagcggctgaaggaactcaagctcgaaagctttctcaagacgacgggcgggaaggggctg
catgttgtcgccccgttgaagcccgcgatagcgtgggagccggtcaagcgtttgacgcag
gttgtcgccatgagcatggcatccgacaatcccgcgcgttatctggcgaaggcgtcgaaa
gcggcgcgcaagggcaagatcttcgtcgattatcttcgcaacgaccgcggctcgacggca
gtcgcaccctattcgacccgggcgcgcgaaggggcaccgatatccgcgccgctcgagtgg
cgcgagctcggaccccgcgtcaaatccgatcaattttgtctcgaaaacatccgggatcgg
ctggcccggttgaagcgcgatccctgggagggctttttcaagctccgccagagcctgaat
tcgaaaacgctggcgcaactggaagcgtcgccttga
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