Hypericibacter terrae: FRZ44_26200
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Entry
FRZ44_26200 CDS
T06396
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
htq
Hypericibacter terrae
Pathway
htq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
htq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRZ44_26200 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
htq03400
]
FRZ44_26200 (mfd)
Enzymes [BR:
htq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRZ44_26200 (mfd)
DNA repair and recombination proteins [BR:
htq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FRZ44_26200 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SecA_DEAD
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QEX17322
UniProt:
A0A5J6MIG2
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All DBs
Position
complement(2842826..2846308)
Genome browser
AA seq
1160 aa
AA seq
DB search
MPISLEHAGLVPVGGAPEGFDALIIADLARRARKGAARPGGELLHVARDDARMARLIDAL
RFADPEIEIVDFPAWDCLPYDRVSPHRDIVGRRVDALTRLRLPRAADAPARVVVTTVAAL
LQRLPPRSSFEGQTLRLEPGATLEPKALTEFLVARGYLRAETVNEVGEFAVRGGIIDLFP
PASPAPLRVDFFGDTIESLRAFDPLNQRSQDKLASFEIKPIGEARLDAAAIERFRTGFRA
AFGGVAGDDPLYEAISAGRLYAGMEHWLPLFLPAMETLPDYLPEALITLDHQAEEARDAR
LDMIRDFYQARRQLERAEETGGVPYRPLPPDRLYINASDWDDWMESRPVAAFTPFAMPED
AAGWQDAGGKAGRDFADVRTSAPATLFAAVVEHLAQARLPRRHVAVAAMSEGSRDRLEHL
LAEHGLEKHERVADLAGVRRLPRDRVAFAVLGLEHGFETPDLVVLAEQDILGDRLVRPTQ
RRKKTDQFLTELANFSHGDLVVHVEHGVGRYEGIETLEIGGAPHDCLKVIYDGGDKLYVP
VENIDVLSRFGSEDLPVPLDKLGGAGWQARKARVKQRLREIAAQLIKTAAARAVHPGVTL
SPPEGLYDEFAARFPYAETEDQQRAIDEVTLDLASGRPMDRLVCGDVGFGKTEVALRAAF
IAAASGYQVAVVTPTTLLCRQHTKTFTERFAGLPLRVAQLSRLVTPKDANQTKADIKAGK
VDIVVGTHSLLAKSVEFANLGLMIVDEEQHFGVAQKERLKELRADVHVLTLTATPIPRTL
QLALSGVREMSLIATPPVDRLAVRTFVLPYDPVVIREAILREHFRGGQSFYVVPRIEDLD
KVAERLRNLVPEIKFVMAHGRMAPTHLEKAMTAFYDRQYDMLLATNIIESGLDIPTANTM
VIHRSDMFGLAQLYQLRGRIGRSKQRGYAYLTLPPGRVLNPTAAKRLQVMQTLDTLGAGF
TLASHDLDIRGAGNLLGDEQSGHIREVGVELYQQMLEDAVKEARGQAKAAQEWTPQISIG
MPVLIPENYVADLGVRLGLYRRIATLVDKTEIDAFGAELIDRFGPLPPEVENLLGIIAIK
QLCRQAGIEKVDAGPKGVVLSFRNNRFAKPAELIAFINRKQDEVSVRPDHKLVWRQEWKD
PNRRVQGVQGLLAHLAKMAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccgatttcattggagcatgcagggctggtcccggtcggcggggcgcctgaggggttc
gacgccctcatcatcgccgatttggcccgacgcgcgcgcaagggcgccgccaggccgggc
ggcgagctgctgcatgtcgcgcgcgacgatgcgcgcatggcccggctgatcgacgcgctg
cgctttgccgatcccgagatcgagatcgtcgatttcccggcctgggactgcctgccctat
gaccgcgtctcgccccatcgcgacatcgtcggcaggcgcgtcgatgcgctgacgcggctg
cgcctgccgcgagccgccgacgcgccggcgcgcgtggtggtgacgacggtggcggccctg
ctgcagcgcctgccgccgcgcagcagcttcgagggccagaccctgcggctggagccgggg
gccacgctggagcccaaggccctgaccgagttcctggtcgcgcgtggctatctgcgtgcc
gagacggtcaacgaggtcggcgagttcgccgtgcgcggcggcatcatcgacctcttcccg
ccggcttcgccagcccctctgcgcgtggatttcttcggcgacacgatcgagagcctgcgc
gccttcgatcccctgaatcagcgcagccaggacaagcttgccagcttcgagatcaagccg
atcggcgaggcccgtctcgatgctgcggcgatcgaacgtttccgcaccggctttcgcgcg
gccttcggcggcgtcgccggcgacgatccgctctatgaggcgatcagcgccgggcgcctc
tatgccggcatggagcattggctgccgctgttcctgcccgcgatggagaccctgccggat
tacctgcccgaggccctgatcacactggatcaccaggccgaggaggcgcgcgacgcccgc
ctcgacatgatccgcgacttctaccaggcgcgccggcagctcgagcgcgccgaggaaacc
ggtggcgtgccctatcgtccgctgccgcccgatcgcctctacatcaatgccagcgactgg
gacgattggatggagagccgcccggtcgcggccttcacgcctttcgccatgccggaggat
gcggccggctggcaggatgccggcggcaaggccggccgcgatttcgccgatgtgcgcacg
agcgcgcccgcgacgctgttcgccgccgtggtcgagcatctggcacaggcgcgcctgccg
cgccgccatgtggcggtcgccgccatgagcgaaggcagccgcgaccggctggagcatctg
ctggccgagcatggcctcgagaagcatgagcgcgtggccgatctcgccggcgttcgccgc
ctgccgcgcgaccgcgtcgccttcgccgtgctgggtctcgagcatgggttcgagaccccg
gacctggtggtgctggccgagcaggacatcctcggcgaccggctggtgcgcccgacccag
cggcgcaagaagaccgaccagttcctgaccgagctcgccaatttctcgcatggcgacctg
gtcgtgcatgtcgagcatggcgtcggccgctatgaagggatcgagacgctcgagatcggt
ggcgcccctcatgactgcctcaaggtcatctatgacggcggcgacaagctttatgtgccg
gtcgagaacatcgacgtgctgtcgcgcttcggctccgaggatctgccggtgccgctcgac
aagctgggcggggccggctggcaggcccggaaggcgcgggtcaagcagcgcctgcgcgag
atcgcggcccagctcatcaagacggccgccgcgcgcgccgtccatccgggcgtgaccctg
tcgccgcccgaggggctctatgacgagttcgcggcccgcttcccctatgcggaaaccgag
gaccagcagcgcgcgatcgacgaagtcacgctcgatctggcctcgggccggccgatggac
cgcctggtctgcggcgatgtcggcttcggcaagaccgaggtcgccttgcgcgccgccttc
atcgccgccgcctcgggctatcaggtcgcggtagtgacgccgacgacgctgctctgccgg
cagcataccaagaccttcaccgagcgcttcgccggcctgccgctgcgcgtggcgcagctc
tcgcgcctggtcacgcccaaggatgcgaaccagaccaaggccgacatcaaggccggcaag
gtcgatatcgtggtcgggacccattcgctcctggccaagagcgtcgagttcgccaatctg
ggcctgatgatcgtcgacgaggagcagcatttcggcgtggcgcagaaagagcgcctcaag
gaactgcgcgccgatgtccatgtgctgactctgacggcgacgccgatcccgcgcaccttg
cagctcgccctctccggcgtgcgcgagatgagcctgatcgcgaccccgccggtcgaccgg
ctggcggtgcggaccttcgtgctgccctatgatccggtggtgatccgcgaggccatcctg
cgcgagcatttccgcggcgggcagagcttctatgtggtgccgcggatcgaggatctggac
aaggtcgccgagcggctgcgcaacctggtgccggagatcaagttcgtgatggcgcatggg
cgcatggcgccaacccacctcgagaaggcgatgacggccttctacgaccggcaatacgac
atgctgctcgcgaccaacatcatcgagagcgggctggacatcccgaccgccaacacgatg
gtgatccaccgctccgatatgttcggcctggcgcagctctatcagctgcgcggccgcatc
gggcgctcgaagcagcggggatatgcctatctgaccctgccgccgggccgcgtgctcaac
ccgaccgccgccaagcggctccaggtgatgcagacgctcgatacgctgggcgcgggcttc
acgctcgccagccacgatctcgatatccgcggcgccggcaatctgctgggcgacgagcag
tccggccatatccgcgaggtcggcgtcgagctctatcagcagatgctggaagatgccgtc
aaggaagcccgcggccaggccaaggcggcgcaggaatggaccccgcagatcagcatcggc
atgccggtgctgatcccggagaactacgtcgccgatctcggcgtgcggctggggctctat
cgccgcatcgcgacgctggtggacaagaccgagatcgacgccttcggcgccgagctcatc
gaccgcttcgggccgctgccgcccgaggtcgagaatctcctgggcatcatcgccatcaag
cagctctgccgccaggcggggatcgagaaggtcgatgccggccccaagggcgtggtgctc
tccttccgcaacaaccgcttcgccaagccggccgagctcatcgccttcatcaatcgcaag
caggacgaggtttcggtgcggcccgaccataagctggtctggcgccaggaatggaaggat
ccgaaccggcgggtccagggcgtacagggcctgctcgcccatttggccaagatggcggcg
taa
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