Hydrogenovibrio thermophilus: EPV75_06425
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Entry
EPV75_06425 CDS
T05808
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
htr
Hydrogenovibrio thermophilus
Pathway
htr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
htr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EPV75_06425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
htr03400
]
EPV75_06425
Enzymes [BR:
htr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EPV75_06425
DNA repair and recombination proteins [BR:
htr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EPV75_06425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
ERCC3_RAD25_C
UB2H
AAA_30
SecA_DEAD
CbiX
Motif
Other DBs
NCBI-ProteinID:
QAB15327
UniProt:
A0A410H344
LinkDB
All DBs
Position
complement(1371636..1375109)
Genome browser
AA seq
1157 aa
AA seq
DB search
MPKPYSLLEADQVPLKGQTSHWSLNTSAEDALVIMEKARNHPGLVVLLTQDMSEANKYED
ALNFFSEGDLSILNFPEWETLPYDQFSPHQDIISQRLRTLYQLPQTQKGILILPVSTLLQ
KVVPHTFIEQYTFILKCGDTLDIEPFTQRLESGGYQRVSQVMEHGEFAVRGSIIDLFPMG
SRTPFRLDLFDDEVETIRCFDPETQLSTEQIDQIELLPAKEYDLNPDGITLFKQRFRQTF
GDESRNSLLYQAVHNGQTVDGLEYYLSLFHPETATLFDYIPENSLFFSQPAIQDAIKQNW
RDYRERYQIAQHNPDYPVLPPEELIQSENDIFSALKNYHRIQLERIASGKNQVDFKTLPA
PDLNVQANSEYPMAKLNAFLDQFQSEYGGRIMYCAESTGRRETLLTLLGKHTEFKGKVPK
IVDDWNAFKHNDLPHQIVVGPLEESIFTPDFCLISEAQIFGQTVIQKRRRKRKHSEFDTA
ISNLIELDIGSPIVHFDHGVGRYLGLETMTIQGEEHEFLMIEYAGEAKLYVPVTSLHLIS
RYTGASAETAPLHKLGSDKWDKAKRKAAEKVRDVAAELLDIYAQREARPGHSFETDEEAY
ARFSASFPFEETPDQEAAIDAVVHDMQASKPMDRLICGDVGFGKTEVAMRAAFIAAYAGK
QVAVLVPTTLLAQQHMENFKNRFADWPVRIEGLSRFQTAKETKQILEAVQNKQVDIVIGT
HKLIQGDMKFDNLGLIIIDEEHRFGVRQKEQLKKLRTEVDVLTMTATPIPRTLNMAMNDL
RDLSIIATPPAKRLAVQTFVLEWNPDVVKEACLREIRRGGQIYLLYNNVDRIEQMAEDMR
ELLPEAKVDVAHGQMHERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHRADK
FGLAQLHQLRGRVGRSHHKAYAYMFTAGKSLMTADAEKRLTAIAKHDTLGAGFMLASHDL
EIRGAGELLGDGQSGQIQEIGFGLYSELLERAVKSLKSGKQPELEAKLHTGAEIELGLPA
LIPEDYLPDIHTRLVFYKRIASADNTNGLQELEVEMIDRFGLLPPQVKNLFEATRVKLLI
EPLNLKKLEASESMIRIQFGDSPNINPVELIKLIQNHPKNYQLKGQTELKYFDTMPDMKQ
RIDAIELIVATISNKDT
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaccctactcgttgctggaagccgatcaggttccactaaaaggccagacgtca
cactggtcgctcaacacctcggccgaagacgcgctcgtcatcatggaaaaagcccgaaac
cacccaggcctggtggttttgctgactcaggacatgagcgaagccaataaatatgaagac
gcgctgaacttcttttccgaaggcgacctttcgattctgaactttccggaatgggaaacc
ctgccctatgaccagttttcaccgcatcaggacatcatctcgcaacgcctgcgcacgctc
tatcaactgccgcaaacccaaaaaggcattttgatcctgccggtcagtaccctgttgcag
aaagtggttccccatacgttcatcgaacaatacacctttatattaaagtgtggcgatacc
ctcgacatcgaaccctttacccaacgtttggaatccggcggctatcaacgcgtcagccag
gtgatggaacacggcgaatttgcggtgcgcggctcgattatcgacctcttcccgatgggc
agccgcacgcctttccgattggacttgttcgacgacgaagtcgaaaccatccgctgtttc
gacccggaaacccagctcagcaccgagcagattgaccaaatcgaactcctgcccgccaag
gaatacgacctcaacccggacggcatcaccttattcaaacaacgcttccgccaaaccttc
ggtgacgaatcccgcaacagcctgttgtaccaagcggttcataacggccagaccgttgat
ggcctggaatattacctgtcattatttcaccccgaaaccgccacgctgtttgattacatt
cccgaaaacagtctgttcttcagccaaccggccattcaggacgccattaaacaaaactgg
cgcgattaccgtgagcggtatcaaatcgcacagcacaacccggattatccggtactgccg
ccggaagaactgattcaatccgaaaacgacattttcagcgccctgaaaaactatcatcgc
attcaactggagcgcatcgcctccggcaaaaaccaagtggacttcaaaaccctgccggca
ccggatttaaatgtgcaggccaatagcgaatacccgatggccaaactcaatgcctttctg
gatcaattccaaagcgaatacggcggccgtattatgtattgcgccgaatccaccggacgc
cgagaaacgctgttaacactgctcggaaaacatactgaatttaaaggaaaagtcccgaaa
atcgtcgatgattggaatgcgttcaaacacaacgatttaccacatcaaatcgtagtcggc
ccgttggaagaatccatcttcacaccggatttctgcctgatttccgaagcgcagattttc
ggccaaaccgtcattcagaaacgacgccgtaagcgcaaacactccgaattcgacaccgcc
atctccaacctcatcgaactggacatcggcagcccgattgtgcatttcgaccacggggtc
ggccgctaccttggcctggaaaccatgaccatccaaggtgaagaacacgaattcctgatg
atcgaatacgccggcgaagccaaattgtacgtgcccgtcacctcgctgcacctcatcagc
cgttacaccggcgccagcgccgaaaccgcaccgttacacaaactcggttccgacaaatgg
gacaaggccaaacgcaaagccgccgaaaaagtccgtgacgtcgccgccgaactgctcgac
atctacgcccagcgcgaagccaggcctggtcattctttcgaaaccgacgaagaagcctac
gcccgcttcagcgccagcttcccattcgaggaaacacccgatcaggaagccgctatcgat
gcggtggtgcatgacatgcaagccagcaaaccgatggaccgcctcatttgcggcgacgtc
ggcttcggcaaaaccgaagtggccatgcgcgccgccttcattgccgcttacgccggcaaa
caggtcgcggttttggtgcccaccaccctgctggcgcagcaacacatggaaaactttaaa
aaccgttttgccgactggccggtgcgcattgaaggcttatcccgtttccaaaccgccaag
gaaaccaaacagattctcgaagcggttcaaaacaaacaggtcgatatcgtcatcggcacc
cataagctgattcagggcgacatgaaattcgacaacctcggcctgattatcatcgacgaa
gaacaccgtttcggcgtgcgccagaaagaacagctcaagaaactccgcaccgaggtggac
gtgctcaccatgaccgccacaccgattccaagaaccctgaacatggcgatgaacgatttg
cgtgacctgtcgattatcgccacgccgccggccaaacgtctggcggtgcaaaccttcgtg
ctggaatggaacccggatgtggtcaaagaagcctgtctgcgtgaaatccgtcgtggcggg
cagatttacctgctttacaacaacgtcgaccgcatcgaacagatggcggaagacatgcgc
gaactcctgccggaagccaaggtggacgtcgcccacggccaaatgcacgagcgtgaactc
gaacaggtgatgcagaatttttatcaccgtcgtttcaacattctggtctgcaccaccatt
atcgaaaccggcatcgacattccaaccgccaacaccattctgattcaccgcgccgacaaa
tttggcctggcgcaattgcatcagttacgcggccgtgtcggacgttcgcaccacaaagcc
tacgcctatatgttcactgccggtaaaagcctgatgaccgccgatgcggaaaaacgcctc
actgccatcgccaagcacgataccctcggtgccgggttcatgcttgccagccatgatttg
gaaatccgtggcgcgggtgaactgctgggcgacggccaatccggccaaattcaggaaatc
ggtttcggtctctattcggaattgctggaacgcgccgtcaaatcgttaaaatccggcaaa
caacccgagttggaggccaagctccacaccggcgcggaaatcgaactcggtttaccggcc
ttgattccggaagactatctgccggacatccacacccgtctggtgttctacaaacgcatc
gccagtgccgacaacaccaacggcttacaggaactggaagtggaaatgatcgaccgtttc
gggctgttaccgccacaggtcaaaaacctgttcgaggccacgcgtgtcaagctgttgatt
gaaccgctgaacctgaaaaaactggaagcgtccgagtcgatgattcgtatccaattcggc
gacagccccaacatcaacccggtggaattgattaaattgattcaaaatcacccgaagaac
tatcaactaaaagggcaaacggaattaaaatatttcgatacaatgcctgacatgaaacaa
cgaatcgacgccatcgaactcatcgtggccaccatttcgaacaaggacacttaa
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