KEGG   Billgrantia tianxiuensis: EKK97_05265
Entry
EKK97_05265       CDS       T08051                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
htx  Billgrantia tianxiuensis
Pathway
htx03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:htx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EKK97_05265 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:htx03400]
    EKK97_05265 (ligD)
Enzymes [BR:htx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EKK97_05265 (ligD)
DNA repair and recombination proteins [BR:htx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EKK97_05265 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QHC49147
UniProt: A0A6I6SNL1
LinkDB
Position
complement(1113023..1115572)
AA seq 849 aa
MERLEEYRRKRDFTRTREPAGEKQGKTTPGHLYVMHKHAASHDHFDLRLEQDGVLRSWAL
PKGPSLEPGEKRLAVEVEDHPLEYGEFEGVIPEKAYGGGTVMLWDRGTWKLKGKPKPDRI
DIELDGERLKGSWTLTRMSGKRQDKHGRNWLLIKRHDDKSRMEDSLTVELDASIASGRSM
QEIAEDRDATWTSSANGEAPPSPPDPSVLTGARRAKLPREATPQLATLAREVPAQGKWVH
EIKLDGYRLLARIEKGDVRLITRNGKDWTHRFPEIVRALEPLPVDSALLDGEVVAMGSDG
ITRFGQLQEALSSGRTAALVYQIFDLPYLAGYALASVPLLQRKRTLEALLGAADMRTGTI
RYSDHIETHGSAFHERACQMGLEGIISKRADSRYQQKRSRDWLKVKCVSHEEFVIGGYTD
PSGSRSGFGSLLMGAYGKQGLVYAGRVGTGFSNRLLERLSATLQELEISRSPFHGSVPDS
RSVHWVRPELVIEVEFTERTRDGRLRHPAFRGLREDRNPEEIRMTPTKEMAAEGTPEQEA
KPGKSAARKRKDETSLLGVRLTHPDRVLFPEQGLTKLDLARFYEQIQEWVLPHLARRPLS
LVRCPQGRNDECFFQKHPRSAIPDSVPRIDVPEKKGSAEYVYVETAADLIGLVQAGALEI
HPWGSRIDHLEQPDSLVFDLDPDQGIAWKEILRVAGTLRERLESLGLTPFLRTTGGKGLH
LVVPLEPSAEWEQAKAFAKGVAEAHAKDDPKRLTTNMSKAKREGRIFLDYLRNGRGATAV
ASYTVRARENAPVAVPIRWDELNAALRADRYNVQNLRRRLSALREDPWAGFDEAARPLDA
QLLKIMGVK
NT seq 2550 nt   +upstreamnt  +downstreamnt
atggaacgactcgaggagtaccgtcgcaagcgcgacttcacgcgaacgcgcgagcccgcc
ggagaaaagcagggtaagaccacaccgggtcatctctacgtgatgcacaagcatgcggcg
agccatgaccatttcgacctgcgcctggagcaggatggcgtgctcaggagctgggcgcta
cccaaaggaccgagcctcgagcccggcgagaagcgtctggccgtagaggtggaagaccat
ccgctggagtatggtgagttcgagggcgtgattcccgagaaagcctatggcggcggcacc
gtcatgctgtgggatcgcggcacctggaaactcaagggtaaacccaagccggatcgaatc
gacatcgaactcgacggcgaacggctaaagggcagttggaccctgacccgcatgagcggc
aagcgccaggacaagcacgggcgcaactggctgctgatcaagcgccacgacgacaagtcg
cgcatggaggattcgctcacggtcgaactcgacgcgagcattgccagcggccgcagcatg
caggagatcgccgaggatcgcgatgccacctggacctccagtgccaatggcgaggcccct
ccctccccacccgaccccagcgttctgacaggcgcccgacgtgcgaagctgccgcgcgaa
gcgacgccgcagcttgccaccctggcacgcgaggtgccggcccaaggcaaatgggtccac
gagatcaagctcgacggctatcgcctgttggcccgcatcgaaaagggcgatgtgcgcctg
atcacccgcaacggcaaggactggacccaccgctttcccgagatcgtccgggcgctcgag
ccgctgccggtggactcggcactgctcgacggcgaggtggtggccatgggcagcgacggc
atcactcgcttcggccagttgcaagaggcgctctccagcggccgcaccgccgctctcgtc
taccagatcttcgacctgccctacctggccgggtatgccctggccagcgtgccgctactc
cagcgcaagcgcaccctcgaggcactgctcggcgctgccgacatgcgaaccggcacgatt
cgctactccgaccatatcgagactcacggcagcgccttccatgagcgcgcctgccagatg
ggactggaaggcatcatcagcaagcgtgccgacagtcgctaccagcagaagcgcagccgt
gattggctcaaggtcaagtgcgtcagccacgaggagttcgtgatcggcggctataccgac
cccagcggctcacgtagcggtttcggttcgctgctgatgggcgcctacggcaagcagggg
ctggtctatgccgggcgcgtaggcaccggcttcagcaaccgtctactggagcgactcagc
gctaccctgcaggaactcgagatttcccgctcccccttccatggcagcgtgccggatagc
cgctcggtgcactgggtacgtcccgaactggtgatcgaagtggagttcaccgaacgcacc
cgcgacggccgcctgcgccacccggcctttcgcggcctgcgcgaggatcgcaacccggag
gagatccgcatgaccccgaccaaagagatggccgccgaaggcacgccggaacaggaagcc
aagccgggcaagtcagccgcacgcaagcgcaaggacgaaacctcgctgcttggcgtgcgc
ctcacccaccccgaccgcgtgctatttcccgagcagggcctgaccaagctcgacctggcg
cgcttctacgagcaaattcaggagtgggtgctgcctcacctggcccgccggccactgtcg
ctggtgcgctgcccccagggacgcaacgacgaatgtttcttccagaagcacccgcgcagc
gccattcccgacagcgtgccgcgcatcgacgtgccggagaagaaaggcagcgccgagtac
gtctacgtcgaaacggccgccgacctgatcggcctggtgcaggcaggtgcgctggagatc
cacccctggggcagccgcattgatcatctcgaacagcctgacagcctggtgttcgacctc
gaccccgaccaaggcatcgcctggaaggagattctgcgtgttgccggcaccttgcgcgag
cgcctcgagtcactgggactcacgccgttcctgcgcaccaccggcggcaaggggttgcac
ctggtggtgccgctcgagcccagcgccgagtgggagcaggccaaggccttcgccaaggga
gtggccgaagcgcatgccaaggacgacccgaagcgcctgaccaccaacatgtccaaggcc
aagcgcgaagggcgaatcttcctcgactacctgcgtaacggacgtggcgccacggcggtg
gcctcctacacggtacgcgcgcgcgagaacgccccggtggcggtgccgattcgctgggac
gagctcaacgccgcactgcgcgccgaccgctacaacgtgcagaacctgcgccgccgtctc
tccgccctgcgcgaggatccctgggcgggtttcgacgaggcggcacgcccgctggatgcc
cagttgctcaagatcatgggcgtgaaatga

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