Humibacter sp. BT305: DVJ78_09350
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Entry
DVJ78_09350 CDS
T05558
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hum
Humibacter sp. BT305
Pathway
hum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DVJ78_09350 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hum03400
]
DVJ78_09350 (mfd)
Enzymes [BR:
hum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVJ78_09350 (mfd)
DNA repair and recombination proteins [BR:
hum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DVJ78_09350 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AroM
DUF2793
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AXH35582
LinkDB
All DBs
Position
1986391..1990026
Genome browser
AA seq
1211 aa
AA seq
DB search
MILQGLTHALTRASVFERALGNAGRATDFSAPEGLRVPLLAGLLERRAELDLPQALLVVT
ATGRESEAVRSALASYAPRADVVEFPAWETLPHERLSPSPEIVGRRIEALRRLRDWSDAH
ERGDRPSPLVVVASVRAALQPIADDLADLEPIRLATGSRGYDLASISEQLVALAYLRVDM
VTRRGEFAVRGGILDVFPPTAEHPYRIDFFGDEVDEMRAFSVADQRSLPDAVAEVVLAPS
RELLLGDAVRQRAREMQHEFPSLAGMLEKIAEGIPVEGMESLAPALVDRLVPLTHYLPAR
SAIAVLSPERVATRSISLAETNREFLSAAWLAATAGAQAPIDLAAGEFLSLNQLRDAAGV
DRAWWTVSEFQQGPDDVLPEHRELEEHLTVRLDGETVPSFHGNVDGAIDHVAQRTKDGWS
VVIAAVGQGLVERAVDVLAEQGVAAVAVDDVPDEPESGSAYVVRAAVERGFELPADRLAL
LSETEFYGRTVGYEARQVKKLASRRKNVVDPMQLKAGDFVVHETHGIGKFLELTQRQVSS
GGRHAVKSTREYLVLEYAPSKRGYPGDKLYVPTDQLDQLSRYVGGEAPTLSKMGGSDWSA
AKGKARKAVRDIAVELVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETPDQLTVIDEV
KADMERPIPMDRLLSGDVGFGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVRQHLETFQER
FAGFPVHLRAMSRFQTDKEVRETVAGLADGTVDVVIGTHRILTDNVVFKDLGLVIIDEEQ
RFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGP
YSDKQVAAAIRRELLREGQVFFVHNRVQSIGRVAANLAELVPEARIAVAHGKMNEHQLEQ
VIVDFWERKFDVLVSTTIIETGIDIANANTLIVDRADKYGLSQLHQLRGRVGRGRERAYA
YLLWDENKPLSETANDRLSTLAANNELGSGMQVALKDLEIRGAGNLLGGEQAGHIAGVGF
DLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHIPEEYVDSERLRLEAYQKMSTASAPT
ASDDSIDRVVEELVDRYGPLPEPVINLVAVSRLRRMAQKANLGEVVAMGSNLRVAPADLP
ESLQVRLKRMYPSAKHFAATNSVSVPMPVVDGSPLADAELIEWVANLIEAIFAPAVASAS
SAPASASTPSA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
gtgatccttcagggcttgacgcatgcgctcacgcgcgcctccgtgttcgaacgggccctc
ggcaacgccggccgcgccaccgacttctcggcccctgagggtcttcgtgtgcccctgctc
gccggcctcctcgagcggcgtgccgagctcgatctgccccaggcgctcctcgtcgtcacc
gccaccggccgcgagtccgaggccgtgcggtccgccctcgcgtcgtacgcgccgcgggcc
gacgtcgtcgagttccccgcctgggagaccctgccgcacgagcggctgagcccgagcccc
gagatcgtcggccgacgcatcgaggccctgcgccgcctgcgcgactggtcggatgcgcac
gagcgcggcgatcgtccgtcgcctctcgtggtggtcgcctcggtgcgtgccgcgctgcag
cccatcgccgacgacctggccgacctggagccgatccgcctcgccacggggtcgcgcggg
tacgacctcgcgtcaatctccgagcagctcgtcgcgctcgcctacctgcgggtcgacatg
gtcacccgccgcggcgagttcgcggtccgcggcggcatcctcgacgtgttcccacccacg
gcggagcacccctaccgcatcgacttcttcggcgacgaggtcgacgagatgcgcgcgttc
tcggtggccgaccagcggtcgctgccggatgcggtggccgaggtcgtgctcgcgccgagc
cgcgagctgctcctcggcgacgccgtgcgtcagcgcgcgcgcgagatgcagcacgagttc
ccgagcctcgccggcatgctcgagaagatcgcggagggcatcccggtcgagggcatggag
tcgctggcgcccgcgctcgtcgaccgcctggtgccgctcacgcactacctccccgcgcgg
tccgcgatcgcggtgctgtcgcccgagcgcgtggccacccgctccatctcgctggccgag
accaaccgcgagttcctctccgccgcctggctggccgccacagcgggcgcgcaggcgccg
atcgacctcgccgccggcgagttcctctccctcaaccagctgcgcgacgccgccggcgtc
gaccgcgcgtggtggacggtgagcgagttccagcagggccccgacgacgtgctccccgag
catcgcgagctggaggagcacctcacggtgcgcctcgacggcgagaccgtgccgagcttc
cacggcaacgtcgacggggcgatcgaccacgtcgcccagcgcacgaaggacggctggtcc
gtcgtcatcgccgcggtcggccaagggctcgtggagcgcgccgtcgacgtgctcgccgag
cagggtgtcgccgcggtcgcggtcgacgacgtgcccgacgagcccgagtccggcagcgcc
tacgtggtgcgcgccgcggtcgagcgcggcttcgagctgcccgccgaccggctcgcgctc
ctcagcgagaccgagttctacgggcgcaccgtcggctacgaggcacgccaggtcaagaag
ctggcctcgcggcgaaagaacgtcgtcgacccgatgcagttgaaggccggcgacttcgtg
gtgcacgagacgcacggcatcgggaagttcctcgagctcacccagcgccaggtctcgagc
gggggtcgccacgccgtcaagagcacccgcgagtacctcgtgctcgagtacgcgccatcc
aagcgcggctacccgggcgacaagctgtacgtgcccaccgaccagctcgaccagctctcg
cgctacgtcggcggggaggcgccgaccctgtcgaagatgggcggcagcgactggtcggcc
gcgaagggcaaggcgcgcaaggccgtccgcgacatcgcggtcgagctggtgaagctctac
tccgcccggatggcctccaagggccacgcgttcgggcccgacaccccgtggcagcgcgag
ctggaggaggcgttcccgttcgccgagacgcccgaccagctcaccgtgatcgacgaggtg
aaggccgacatggaacggccgatcccgatggaccgtctgctctcgggcgacgtcgggttc
gggaagaccgagatcgccatccgcgcggcgttcaaggcggtgcaggacggcaagcaggtc
gccgtgctcgtgcccacgaccctgctcgtgcgccagcacctcgagacgttccaggagcgc
ttcgccggcttccccgtgcaccttcgcgcgatgagccgcttccagaccgacaaggaggtg
cgcgagacggtcgcgggtctggccgacggcacggtcgacgtcgtgatcggcacccaccgc
atcctcaccgacaacgtcgtgttcaaggacctcgggctcgtcatcatcgacgaggagcag
cgcttcggcgtcgagcacaaggacgcgctgaagaagctcaagacgaacgtcgacatcctc
gcgatgagcgcgacgcccatcccgcgcacgctcgagatggccgtcaccggcatccgcgag
atgtcgaccctcgccaccccgccggaggaccggcaccccatcctcaccttcgtggggccg
tactccgacaagcaggtggccgcagccatccgccgcgagctgctccgcgagggccaggtg
ttcttcgtgcacaaccgcgtgcagtcgatcgggcgcgtggccgcgaacctcgccgagctg
gtgccggaggcgcgcatcgcggtcgcgcacgggaagatgaacgagcaccagctcgagcag
gtgatcgtcgacttctgggagcgcaagttcgacgtgctcgtgtcgacgacgatcatcgag
accggcatcgacatcgccaacgccaacaccctcatcgtcgaccgggccgacaagtacggc
ctcagccagctgcaccagctgcgcggccgggtgggccgtggccgcgagcgtgcctacgcg
tacctgctgtgggatgagaacaagccgctctccgagacggcgaacgaccggctctcaacg
ctggcggccaacaatgagctcggcagcggcatgcaggtggcgctcaaggacctcgagatc
cgcggggcgggcaacctgctcggcggcgagcaggcgggccacatcgcgggcgtcggcttc
gacctctacctgcgcatgatcggcgaggccgtctcgacgttccggggcgatgtggccgag
gggcagacggagctccgtctcgagctcccggtggatgcgcacatccccgaggagtacgtc
gacagcgagcggctgcgtctcgaggcgtaccagaagatgtcgacagccagcgcgccgacc
gcctccgacgacagcatcgaccgcgtggtcgaggagctcgtcgaccgctacggtccgctg
ccggagcccgtaatcaacctcgtcgcggtgtcgcggctgcgtcggatggcgcagaaggcg
aacctgggcgaggtcgtggcgatgggctcgaacctccgggtggcgcccgccgacctcccc
gagtcgctgcaggtgcggctgaagcggatgtacccgtcggcgaagcacttcgcggcgacg
aactcggtctcggtgcccatgcccgtggtcgacggctccccgctggcggatgcggagctg
atcgagtgggtcgcgaacctgatcgaggcgatcttcgcccccgcggtggcctcggcgtcc
tcggctccggcgtcggcctcgactccgtcggcctag
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integrated database retrieval system
